Rhincodon typus (whale shark): 109922317
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Entry
109922317 CDS
T06055
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1S-like
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04010
MAPK signaling pathway
rtp04020
Calcium signaling pathway
rtp04260
Cardiac muscle contraction
rtp04261
Adrenergic signaling in cardiomyocytes
rtp04270
Vascular smooth muscle contraction
rtp04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
109922317
04020 Calcium signaling pathway
109922317
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
109922317
09153 Circulatory system
04260 Cardiac muscle contraction
109922317
04261 Adrenergic signaling in cardiomyocytes
109922317
04270 Vascular smooth muscle contraction
109922317
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rtp04040
]
109922317
Ion channels [BR:
rtp04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
109922317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
DUF2919
PRIMA1
DUF3408
Motif
Other DBs
NCBI-GeneID:
109922317
NCBI-ProteinID:
XP_048467812
LinkDB
All DBs
Position
25:complement(43757306..43896592)
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AA seq
1732 aa
AA seq
DB search
MDAKLEAAGELKSRRVDSKKAKKPVCAGPPRPPRSLLCLSLQNPLRKVCTSIVEWKPFEI
IILITIFANCVALAVYTPLPGDDTNSLNFKLEKVEYVFLIIFTIEAILKIIVYGFLFHPD
AYLRNFWNILDFVIVFVGLCTVALEQLSPSAKSAGFDVKALRAFRVLRPLRLVSGVPSLQ
VVLNSIIKAMVPLLHIALLVLFMIIIYAIIGLELFMGKMHKTCFYVGTDIVADVWPAPCA
HSGHGRQCTINGTECRSGWPGPNTGITHFDNFGFAMLTVYQCITMEGWTNVLYWVNDAIG
NEWPWIYFVSLILLGSFFVLNLVLGVLSGEFSREREKAKSRGDFQKFREKQQLDEDLKGY
LDWITHAEDIDLDHINHGDGMLTLIESGSMASQELLELEGVSLLSRVNWRCQRWNRLFRR
KCRALVKSDFFYWLVIFLVFLNTLMIASEHHHQPDWLTNVQDTANKVLLALFTVEMMLKM
YSLGLQAYFVSLFNRFDCFVVCGGILETILVEVKMMSPLGISVLRCIRLLRIFKITRYWT
SLSNLVASLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKYNFDDMVVRRSTFDNFPQA
LLSVFQILTGEDWNSVMNDGIMAYGGPSFPGVLVCIYFIILFVCGNYILLNVFLAIAVDN
LAEAESLTSAQKEAAEEKKRRKLERAANPGRSEEEKLLLKKLELAKLKAEGIPTTAKLKV
DEFEANVNEVKEPYPSADFPGDDEEEEPEFPLSPRPRPLAELQLKEKAVPMPNASSFFIF
SPTNKLRKLCHRIVNATTFTNFILLFILLSSISLAAEDPIRADSFRNQVILAYFDIAFTA
IFTMEIILKMTTYGAFLHKGSFCRNYFNILDLLVVSVSLISFGIQSSAISVVKILRVLRV
LRPLRAINRAKGLKHVVQCVFVAIKTIGNIVIVTTLLQFVFACLGVQLFKGKFYSCTDPS
KMTEEDCKGQFIVYGEPDQLSVQERMWLNSDFNFDNVLLAMMALFTVSTFEGWPQLLYKA
IDSHTEDMGPIYNYRVGISIFFIIYIILIAFFMMNIFVGFVIVTFQEQGEAEYKNCELDK
NQRQCVQYALKARPLMRYIPKNKYQYNVWYVVTSSYFEYLMFALILLNTICLGMQHYEQS
EEMNQLSDILNVVFTGLFALEMVFKLCAFKAKGYFGDPWNVFDFLIVIGSIIDVILSEVN
ESEDSSRISISFFRLFRVMRLVKLLSRGEGVRTLLWTFIKSFQALPYVALLIVMLFFIYA
VIGMQVFGKIANVDGAQINRNNNFQTFPQAVLLLFRCATGEAWQEIMLACRPGKLCDPES
DYEPGEEYTCGTNFAVFYFISFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEF
KRIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKFCPHRVACKRLVSMNMPMNSDGTVT
FNATLFALVRTALKIKTEGNFEQSNEELRTIIKKIWKRTSMKLLDQVIPPIGDDEVTVGK
FYATFLIQEHFRKFKKRQEEYYGILPSKKNQNQNEIVLQAGLRSIEEEVGDNLHRSVSGE
LPVEEEGDQTMEEGGLDETIYRRTGGLFGEQPDSYPMNRSGSLQQHMTSQRPLQFSKSEG
GGEEPESPHSRLTDSPFNTTSFFPATDNANTNNANNTALNSSKVLTARGLQELASDPAFV
AMTVSEMAEACLMDHNELERAALNLVKGHSIQTEPKESLLPEALVDPPSGCC
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgaagctggaggcggccggggagttgaagagccggcgggtggacagtaaaaag
gccaagaagccggtgtgtgccggcccgcctcggccaccccgatccctcctgtgtctgagt
ctccaaaacccgctccgcaaagtctgcaccagcatcgtagagtggaaaccctttgaaatt
atcatattaattaccatctttgccaattgtgtggccctggctgtgtacacgccccttcca
ggagatgacaccaattcgttgaatttcaagttggaaaaggttgagtacgtcttcctgata
atattcacaattgaagcaattttgaaaatcattgtgtatggcttcctgtttcacccagat
gcctacttgcggaatttctggaatattctggattttgtcattgtctttgttggactctgt
actgtggcattggagcagctgagcccatcagcaaagagtgcaggctttgatgtgaaggct
cttcgagcgttccgagtgttaagaccattgcgcttggtgtcgggagttcccagtttgcag
gtggttctgaactcaatcatcaaggccatggtccctctgcttcacattgctctgctggtc
cttttcatgatcatcatctacgccatcattggattggagctgttcatgggcaaaatgcac
aaaacatgtttttacgttggcacagatattgttgctgatgtgtggccggccccatgtgcg
cattcgggacatggccgtcaatgcaccatcaatggcactgagtgcaggtcaggctggcca
ggacccaacaccggcatcactcacttcgataactttggattcgccatgttaacggtttac
cagtgtatcaccatggagggctggaccaatgtcctgtactgggtcaatgatgccattgga
aatgagtggccttggatctactttgtcagtctcatcctcttgggctcattcttcgtgctg
aaccttgtactgggcgtcctgagtggggagttttccagggagagagagaaggccaagtct
cggggagatttccagaagttcagagagaagcagcagctggatgaggatctgaaaggttac
ctggattggatcacacacgctgaggatattgacctggaccacatcaaccacggagatgga
atgctaaccttaattgaaagtggctccatggcctctcaggaactgctcgagttggaggga
gtgagcctgctgtcacgtgtcaattggcgatgtcagagatggaaccggctgttcaggcgg
aagtgcagagcattggtcaaatccgacttcttctactggctggtgatattcctggttttc
ctcaacactttgatgatagcatcggagcatcaccatcagcctgactggctgaccaacgtc
caggacactgccaacaaggtgctcttagccctgttcacggtggagatgatgctgaagatg
tacagtcttggcttgcaggcttactttgtctcactgtttaatcggtttgactgctttgtg
gtgtgtggtgggatcctggaaacgattttggtggaggtgaagatgatgtctccacttgga
atttctgtcctccggtgtatccgactcctgagaatcttcaaaatcaccaggtattggact
tccctgagcaacctggtcgcctccctgttgaactcagtccgttccattgcatccttactc
ctcctcctcttccttttcatcatcatcttctcgttgctggggatgcagctgtttggtgga
aagtataattttgatgacatggttgtgcgaaggagcacatttgataacttcccacaggca
ttgctgagtgtgttccagatattgactggcgaggactggaattctgtcatgaatgatggc
atcatggcctatggaggtccttccttccctggtgtgctcgtctgtatttacttcatcatc
ctgtttgtttgtggaaactatattctgttaaatgttttcttggccatcgctgttgacaat
ctggcagaggcagaaagtctgacatcagctcagaaagaagcagcagaggagaagaagaga
aggaagttggagagggctgccaacccgggccgatcagaggaagagaaactactgttgaag
aaacttgaactggcaaagcttaaggccgagggtattcccaccactgccaagctgaaagtg
gatgagtttgaagctaatgtcaatgaggtgaaggagccttacccttctgctgactttcca
ggtgatgatgaggaagaggagcctgaattccccctgagcccccgtcctcgtcctcttgct
gagctccagctgaaagagaaggcagtccccatgcccaatgccagctccttctttatcttc
agcccgacaaacaaattacgcaagttgtgccacaggatcgtaaatgcaaccacctttaca
aacttcatccttctctttatcctgttgagtagtatctcacttgctgcagaagaccccatt
cgagcagattccttccgcaaccaggtaatccttgcctattttgatattgcttttactgcc
atcttcaccatggagattattttgaagatgacaacatatggtgccttcctacataaaggc
tctttttgtcggaattacttcaatatcctggacttgttggtcgtcagtgtctccctcatc
tcctttggaattcagtcaagtgctatctctgtggtaaagattcttcgagtcctccgagtg
ctcagacctttgagagctattaacagagccaagggattaaagcatgtggttcaatgcgtc
tttgtggccattaagaccatagggaacattgtgattgttaccaccctcttacagtttgtg
tttgcctgcctcggggtgcaacttttcaagggaaagttttacagctgcactgatccctcc
aaaatgacagaagaagactgcaaaggacagttcattgtctatggtgaaccagatcagctc
tcagtccaggagcgaatgtggcttaatagcgacttcaattttgacaatgtgttgttggcg
atgatggctctctttacagtttccaccttcgaggggtggccccagttattgtacaaagcc
attgactctcacactgaagacatgggccccatctacaactaccgagtcggcatttcaata
ttcttcatcatctacatcattctcattgctttcttcatgatgaatatctttgtggggttt
gtcattgtaacgttccaggaacagggagaggctgaatacaagaactgtgagctcgacaaa
aaccagcgtcagtgtgtccagtatgccctgaaggcacgacccctcatgaggtacattccc
aagaacaaatatcagtacaacgtgtggtatgtggtgacctcctcatactttgaatacctc
atgtttgccctcatcctgctcaataccatctgtcttgggatgcagcactatgagcaatca
gaggagatgaaccagttgtcggacatactgaatgtagtcttcactgggctattcgcattg
gaaatggtttttaaactttgtgctttcaaagctaaaggttattttggagatccctggaat
gtatttgatttcctgattgtcattggcagtattatcgatgtgatcctcagtgaggtcaat
gagtcagaggatagctcccgtatctccatctccttctttcgtctatttcgtgtgatgcgc
ctggtcaaattgttgagcagaggagagggggttcgaacattgctgtggacgttcatcaag
tccttccaggctctgccctatgtggctctgctcattgtgatgctgttctttatctacgct
gtcattgggatgcaggtctttggtaagattgccaatgtggatggagcacaaatcaatcgc
aataacaacttccagacgttcccacaagctgtgctcctgctattcagatgtgctacaggt
gaagcctggcaggagattatgctggcctgccgacctggtaaactctgtgaccctgaatct
gactacgaacctggcgaagagtacacctgtggaaccaactttgctgttttctacttcatc
agtttttacatgctctgtgctttcttgattattaacctgtttgtggctgtaattatggac
aactttgattacctgacacgtgattggtccattctgggccctcaccacctggatgagttt
aagaggatctgggctgagtatgatcctgaggccaagggccggatcaaacacctggatgtg
gtaacattgctccgtcgcatccagcctcctctgggctttggcaaattctgcccccaccgt
gtggcctgtaagcggctggtgtcaatgaacatgcccatgaacagtgatggcacagtcacc
ttcaacgccacactctttgcactggtacgaacggccctcaaaattaaaaccgaaggaaat
tttgaacagtcgaatgaagaactgagaaccatcatcaaaaaaatctggaaacgaacgagt
atgaaattactggaccaagtgatccccccaattggagatgatgaggtgacagttggcaag
ttctatgccacgtttctaatccaagaacacttccgtaagtttaagaaacgtcaagaagaa
tattatggaattctcccatcaaagaagaaccagaatcaaaatgagattgtgctccaggct
ggattgcgcagtattgaggaggaggttggtgataatctccatcgaagtgtatctggagag
ctgccagttgaagaggaaggagaccaaacaatggaggaagggggcttggacgaaacaatt
tataggagaacgggtggtctgtttggagaacagcctgattcgtatccaatgaacagaagt
ggttccttgcagcaacacatgacgagccagcgaccgttacaattcagcaaatctgagggt
ggaggagaggagcctgaatcgccacacagcagactgacagattcgccatttaacacaacc
agtttcttcccagcaactgacaatgcaaacacaaataatgccaacaacacagccctaaac
agttcaaaggtgctgacagcccgtggactacaggaactggccagtgacccagcctttgtg
gcaatgactgtgagtgagatggcagaagcttgcctgatggatcacaatgagctggagaga
gcagcactgaacttggtgaaaggccactcgatacagacagaacccaaagagagcctctta
cctgaagctctggtggatcctccatccggctgctgctga
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