KEGG   Rhincodon typus (whale shark): 109922352
Entry
109922352         CDS       T06055                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp03020  RNA polymerase
rtp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109922352
  09124 Replication and repair
   03420 Nucleotide excision repair
    109922352
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rtp03021]
    109922352
   03400 DNA repair and recombination proteins [BR:rtp03400]
    109922352
Transcription machinery [BR:rtp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     109922352
DNA repair and recombination proteins [BR:rtp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      109922352
SSDB
Motif
Pfam: Zn_ribbon_TFIIS Ogr_Delta Zn_ribbon_GRF_2 Zn_Ribbon_TF DUF7729 Zn_ribbon_NrdR Zn_ribbon_RPB9 Lar_restr_allev Zn_Ribbon_1 GpA_ATPase Zn_ribbon_3 Zn_ribbon_8
Other DBs
NCBI-GeneID: 109922352
NCBI-ProteinID: XP_048474171
LinkDB
Position
39:6937858..6946735
AA seq 103 aa
MVWSVFMTLCSFSWFWCRNCDYQQEADNSCIYVNKITHEVDELTQIIADVAQDPTLPRTE
DHPCPKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE
NT seq 312 nt   +upstreamnt  +downstreamnt
atggtctggtctgtgttcatgactctctgtagtttctcatggttctggtgtcgaaactgt
gactaccaacaagaagctgataacagctgtatctatgtcaacaaaatcacacatgaagtg
gatgaattgactcaaatcatagccgatgtggcacaggatcccacactgcccagaacagaa
gaccatccctgcccaaaatgcggacacaaagaagctgtgtttttccagtcgcacagtgca
agagctgaggatgcaatgaggctgtactatgtgtgcacagcaccacactgcggccatcgt
tggactgagtga

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