Rhincodon typus (whale shark): 109922570
Help
Entry
109922570 CDS
T06055
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04140
Autophagy - animal
rtp04148
Efferocytosis
rtp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109922570 (vps11)
04148 Efferocytosis
109922570 (vps11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109922570 (vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109922570 (vps11)
Membrane trafficking [BR:
rtp04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
109922570 (vps11)
Hops complex
109922570 (vps11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
Clathrin
zf-C3HC4_2
zf-RING_2
zf-rbx1
TPR_GEMI5
zf-C3HC4
Beta-prop_EML
zf-C3H2C3
Prefoldin_2
zf-RING_5
Beta-prop_EML_2
GHL13
zf-ANAPC11
ISG65-75
Spectrin_7
zf_RING_Vps8_fungal
zf-RING-like
zf-RING_UBOX
DUF484
Motif
Other DBs
NCBI-GeneID:
109922570
NCBI-ProteinID:
XP_020378209
LinkDB
All DBs
Position
32:276758..302236
Genome browser
AA seq
932 aa
AA seq
DB search
MAAFLQWRRFVFFDKEPLMERGEAAAAEFRSPGDSAISVCTSGRGSLVLGDIEGNIWFVS
RTLQSSSFQAYKLRVTHLYQLKQHNILVSVGEDELGINPLVKVWNLEKRDSSGNPLCTRI
FSAIPGNKPTEVSCLTVHENLNYMAIGFTDGSVVLKKGDITRDRHSKTDVLAEGTYPITG
LGFQQSGKQTHLFVVTTENVKSYNVSLKEFPVVELDNHGCSLHCSALCDPSQDNQLIVAG
DDCVYLYQPDERGPCFAFDGQKQIVHWYRGYLLIVSKEKKTSKTDLVGGNEQSSEKQILT
IYDLDNKFIAYTAAFDDIVDVLSEWGSLYVLTSNRKISVLQEKDTQTKLEMLFKKNLFVM
AINLAKSHHLDNDGLADIFRQYGDHLYVKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQR
IHNLTAYLQALHRQSLANEDHTTLLLNCYTKLKDSSKLEEFIKTSDNEVHFDVETAIKVL
RQAGYYRHAVYLADKHSHHEWYLKIQLEDIKNYQEALCYIGKLPFDQAERNMKNYGKTLM
HHAADETTELLKILCTDYRASGELPAETEAGGRYKDKANSEEFISIFANNPRELKNFLEH
MIQVQVNSPQGVYDTLLELRLQDWAHEEDVQVKKRLQEDAMSLLKSGLFKAVFDKALVLC
QMHNFKDGVLYLYEQGRLYQQIMHYHMQNDEYAKVIETCERYGEQEVCLWEQALGYFARK
EEDCKEYISSVLRHIDRNNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQQESDHIAEDE
RRIKQYREETKKIQEEIEELKSSAKIFQKPKCSMCNSPLELPSVHFLCGHSFHQHCFESY
AEHDSECPTCMPENRKVMDMIHAQEQKLDLHDKFQHQLKCSKDGFSIIADYFGRGVFNKL
TLITDPLPGRAATANLDVGLQRDLLIHTKRTA
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggctgccttcctgcaatggagacggttcgttttcttcgacaaggagccactgatggag
cgcggggaggcggccgccgccgagtttcgcagccccggggactcggccatcagcgtctgt
accagcggcaggggcagcctggtgctgggggacatcgaagggaatatctggtttgtgtcg
cgaacattacaatcgagctccttccaagcatacaagctgcgagttacacacctctaccag
ctcaaacagcacaatattctggtctcagtgggcgaggatgagctcggtattaatcctttg
gtgaaggtgtggaatctggagaagcgggatagcagtgggaatcctctctgcacacgaatc
ttttccgcaattcctggcaataagcccacagaggtctcgtgcctcactgtccatgagaac
ctgaactacatggcaatcggcttcacggacgggagtgttgtcctgaagaaaggtgacatc
actcgtgacagacacagcaagactgatgttctagcggaggggacctaccccatcactggc
cttggattccaacagtctgggaaacagacccatctctttgtggttacaacagagaatgtc
aagtcgtacaatgtttccctgaaggagttccctgtggtggagctggataaccatggctgc
agcctgcattgttcagccctctgtgacccctcacaggacaaccagctgattgttgccggc
gatgactgtgtctatctctaccagcctgacgagcgtgggccctgctttgcttttgatggc
cagaagcagattgtgcactggtaccgtggctatctcctcatcgtgtcgaaggagaagaaa
acctccaagactgatcttgttggaggtaacgagcagtcgtcagagaagcagatactcacc
atctacgacctggataataaattcattgcatacacggcagctttcgatgacattgtggat
gtgttgtctgagtggggctcactgtacgtgctgaccagcaatcgtaaaatcagtgttctg
caggagaaggacacacagacaaaactcgagatgttatttaaaaagaacctgtttgttatg
gccatcaatttggcgaagagtcaccatttagataacgacggactggcagatatcttccga
cagtatggtgaccacctgtatgtgaaaggggatcatgatggtgctatacagcaatacatc
cgcaccatcgggaagctggagccatcatatgtgatacggaagtttctggatgcgcagcgg
atccacaatctgacagcataccttcaggccctgcaccgtcagtcattggccaatgaggac
cacacaacgctcctgctcaactgttacacgaaactaaaagatagctccaaacttgaggag
ttcatcaagaccagtgataatgaggtccactttgatgttgaaactgcgatcaaggtgctg
cgtcaggcaggttattaccgacacgctgtctatctggccgataaacactcccaccacgag
tggtacctcaagatccagctcgaggacatcaagaactatcaggaagccctgtgctatatt
gggaagctgccctttgaccaggcagagaggaacatgaagaattacggcaagacactgatg
caccatgctgcagatgagaccactgaactactgaaaatcctgtgtacagattacagagcc
agcggagagctaccagcagagacagaagctggaggaagatacaaggataaggcaaattct
gaggagtttatttcaatttttgccaacaacccacgggaactgaagaatttcttggagcac
atgatccaggttcaggtgaactccccacagggtgtgtatgatactctgcttgaactcagg
ctgcaggactgggcccatgaggaagatgttcaggtgaagaagcgactgcaggaagatgcg
atgagtctgttgaagagtggtttatttaaagctgtctttgacaaggcgctggtgctgtgc
caaatgcacaatttcaaagatggagtgttgtacctgtatgagcagggccgactataccag
cagataatgcactatcacatgcagaacgatgagtatgccaaagtgatcgagacctgtgag
aggtatggggagcaggaggtctgcctctgggaacaagcacttggatactttgcacggaag
gaggaggattgtaaggaatacattagcagtgtgctgcgacacattgacaggaacaacctc
atgcctcctttgctggtcgtacagacactggctcacaactccacagccacactctcggtc
attaaggattatctcattaataagctgcagcaagaaagtgatcacattgctgaagatgag
cgcaggatcaagcaatatcgtgaagaaaccaagaaaatccaggaggagattgaagaactt
aaaagcagtgcaaagatctttcagaagcccaagtgcagcatgtgtaacagtcccctggaa
ctgccctctgtccacttcctgtgtggccactccttccaccaacattgctttgagagttac
gcagagcacgactcggagtgtccgacctgcatgcctgaaaaccgcaaagtcatggacatg
atccatgcccaggaacagaagctggatcttcatgacaagttccaacatcagctgaagtgt
tcgaaggatggattctcgatcattgcagattactttggccgtggggtcttcaataaactg
acgctaatcacagaccctcttcctgggagagcagccactgcaaaccttgatgttggactt
cagagggacttgttgatacacacaaagagaacggcttaa
DBGET
integrated database retrieval system
