Rhincodon typus (whale shark): 109922629
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Entry
109922629 CDS
T06055
Symbol
fn1b
Name
(RefSeq) fibronectin 1b
KO
K05717
fibronectin 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04510
Focal adhesion
rtp04512
ECM-receptor interaction
rtp04810
Regulation of actin cytoskeleton
rtp04820
Cytoskeleton in muscle cells
rtp05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109922629 (fn1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109922629 (fn1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109922629 (fn1b)
04810 Regulation of actin cytoskeleton
109922629 (fn1b)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
109922629 (fn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109922629 (fn1b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtp04147
]
109922629 (fn1b)
00536 Glycosaminoglycan binding proteins [BR:
rtp00536
]
109922629 (fn1b)
04990 Domain-containing proteins not elsewhere classified [BR:
rtp04990
]
109922629 (fn1b)
Membrane trafficking [BR:
rtp04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
ER-Golgi intermediate compartment (ERGIC) proteins
109922629 (fn1b)
Exosome [BR:
rtp04147
]
Exosomal proteins
Exosomal proteins of bladder cancer cells
109922629 (fn1b)
Glycosaminoglycan binding proteins [BR:
rtp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109922629 (fn1b)
Domain-containing proteins not elsewhere classified [BR:
rtp04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type I domain-containing proteins
109922629 (fn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
fn1
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
Fn3_Dep-1_2nd
fn2
NDNF
FN3_Tor_3rd
Arylsulfotran_N
Glyco_hydro_66
Motif
Other DBs
NCBI-GeneID:
109922629
NCBI-ProteinID:
XP_048454572
LinkDB
All DBs
Position
7:complement(9259917..9350602)
Genome browser
AA seq
2323 aa
AA seq
DB search
MHHSMLGVLFLAVCLSAVSGQAGKKRRQSPYDGNTQNQNYCLDNGKVYHVNQQWERTYMG
RVMICTCYGAGRGWNCESKPDVEEMCYDQYTGTRQRVGDTWERPKDGMIWDCTCIGAGRG
RISCTIANRCHEGGQSYKIGDTWRRPHETGGHMLECVCLGNGKGEWTCKPIAERCYDNVA
GTTHDVGETWERPYQGWMMMECTCLGEGSGRITCTSRNQCNDQDTRMSYRLGDNWTKRDN
RGNLLHCSCKGNGRGEWECERHASLASGSESTHLQREVQRVGYQPQCVSDGGILYSDGMQ
WFKKQGSSRMLCTCLGNGVSCRDLPSQTYGGNTNGQPCVFPFMFMGKTYQSCTSEGRNDG
KFWCSTTKDFDSDRTYSFCNQHASTYIQSRGGNSNGALCHFPYLYNMRNYTECTSDGRRD
NMKWCGTTANYDTDGRFGFCPMAEHEEVCTNSEGVMYHIGDQWDKKHEQGHMMRCTCHGN
GRGEWTCIAHAQLRDQCVVDGITYEVDQTFYKRHDEGHQMNCTCYGQGRGRWKCDAIDQC
QDTETRQFYQIGESFQKYRDGIQYLCHCYGRGIGEWSCQPQSASPGPIKVLITEAGNQTN
SHPILWNKPESYHIVRYILKWKPKNSRERWREVTIPGDTYSYTIRDLKPGLTYEGQLASK
PQYGRTMVTSFEFTTSYVTLSPTQGETELLPEGDIIRESSTTESITEVTSSSFVVSWVTA
SDTVSGFRIKYELSEDDAQPQYLDVPNTVTSVSIPNLLPGRKYIVNVYEVSEDGEKLILT
KTPTTAPDSPTEYTVDHVDETSITIEWSRPQAPITGYRVVYTPSVEGASTEIILPSTSTN
LTLTDLLPGIQYNISIYAVEESQESVPLVIQQTTGGVPLPVVVETPSNLQFIDVSENKIT
IMWNAPRTEVTGYRVTVLALDRPGRRPTELPRSTNNFAEITRLQPGTTYRFSIYAVNREA
ESRPLVGQQTTKLDAPTNLSFRNITETTALVTWTPPRARITGYLLTWGLTTNGQPKSLRL
KPGTTHHRLFKLLPGAEYVVALTAKQDDLSSQRVHDVLTTLETMGPVPNINTEVTDTAII
VTWTPMPRISFRVGVRPSQGGETPREVTSDSGSIIISSLTPGTEYTVSITLLVNDQERDR
PVTKTVVTELSPPTDLQVYPDPTTGELTVTWREGPSPDITGYRVTCVPKPGQQGNLLEEF
VEPGQTSWIPENLTPGVEYNVSVYTVKNGKESQPASAVITQEIPQLTDLTFVDVSDTSIG
LQWTPLNFSAITGYRITVIAAGESVPILEDFVSSSTGYYTVQGLEPGIDYDISVITLIEG
RASVTTTRKQQTAVPPPTNLRFTHVGADTMRVSWSAPPSIDLSNFLVRYRPVGDEEGPTD
LTITPSNSMVVLTGLQPGTEYLVQVYCVIDERESTPLSGTQRTGIDSPTGIDFSGVATTS
FTVHWLPPKARVTSYRVRHQLEGSTRPKDERVPASRTSLLLTNLAPGSEYVVSIYAYNGR
QESLPLVGQQSTISDSPTDLEFTRSTPKSLTISWKPPPVTVKFYRIAFGESGGRGPVKEI
TVPGADSTATISGLRPGTEYTVTVYAVTGRGDSPATSKPVVGSEKTEIDMPTSLKVKEVH
DNSLTISWKPPVAPVTSYRVTSAPKDGIGPVISHTVPAGQSPEAPLVGLRPGTEYTVQVY
ALYDDQESTPLIGTQSTAVPPPTDLEFVQVTPTSMTIAWHAPDTDLTGYRVVVKPREKAG
PSKELNLGPDNTSATVSGLMVATKYNIFVYTIKNILTSRPLQGIKATLDDVGSPRKIRVS
GVTETSITLQWRTKAETITGFQIDAIPTGGQSPVQRTVGPNQRSYTITGLLPGTEYSINI
YSLNGDSRSTPSSVIARTAIDSPSNLRFISTTTNSIMFTWQRPRARITGYIVTYHAKGER
PVELYPRPTINTHEAVITGLRPGTEYTINIRAVQNSLQSEPLSGKKITGPSDGGQRPSVE
QGGRTTGQPDDRSPLPRPVRPEDDERRTTSPGRGSQGTGAEGPYHQGPTSPTHSQGLVVE
EEGLPNGHGRQPKTIISWQPSTVAWEYLVTCHPVGQKEKVFELRVPGTSTYAVLPNLVLG
TQYKVLVEAIDAEGKHKILEEVITVGSTSPDQASHLIPDESCFDTATNSHYAIGQEWERM
SETGFKLWCKCLGYGSGHFRCDSTKWCHDNGQNYRVGEKWNRRGDGGHMLSCTCLGNGKG
EFKCEPHEATCYDEGNMYNVGEQWQKEYLGAICTCTCLGGQQGWRCSNCHRPGFDPLVDG
TNSQSSESSLSQYTQIRHGTRYIHCPVECRSQGSLLADSGQLE
NT seq
6972 nt
NT seq
+upstream
nt +downstream
nt
atgcaccactccatgctcggggtcttgttcctggccgtgtgtctgagtgcagtcagcggc
caagcaggcaaaaagagaaggcaaagtccgtacgatggaaatacccagaatcagaattat
tgtttagacaatgggaaggtttaccacgtcaaccagcaatgggagcgtacatacatgggc
cgtgtgatgatctgtacctgttatggggcagggcgaggttggaattgtgaatcgaagccg
gatgtcgaggagatgtgctacgaccagtacactgggaccaggcaacgtgtcggcgacacc
tgggaacgcccgaaggatggcatgatctgggactgtacctgtattggagctggcagaggg
aggatcagctgtaccattgcaaatcgctgccatgagggtggtcagtcctataagattggg
gatacctggcgaagacctcatgagacaggtggccacatgttggagtgtgtttgccttgga
aatgggaaaggcgaatggacctgcaagccaatagcggagaggtgctacgacaatgtggca
ggcacaacccatgatgttggcgagacctgggaaaggccataccagggctggatgatgatg
gagtgcacatgcctaggagaaggcagtggacggatcacctgcacctcacggaaccaatgc
aatgaccaggatactcgaatgtcctatagacttggagataactggacaaagagggacaac
aggggaaatctccttcactgttcctgtaaaggcaacgggcgtggagagtgggaatgtgaa
cgacatgcttctttggcatccggttccgaaagcactcacctacagcgtgaagtccagcgc
gtgggttaccagcctcagtgtgtcagcgacggaggtattttgtacagcgatggaatgcaa
tggtttaagaagcaggggagctcacgcatgttgtgcacctgtctgggtaatggtgtgagc
tgccgcgatttgccatctcagacatatggaggtaacaccaacggacaaccctgcgtgttt
cccttcatgttcatgggcaagacttaccaatcctgtacaagtgaaggacgcaacgatggc
aaattctggtgcagtacgaccaaagactttgacagcgatcgcacttactcgttctgtaac
cagcatgcttccacgtacattcagagccgaggagggaactcgaatggggcgctgtgtcac
ttcccttacctgtacaacatgcggaactacactgagtgcacatctgatggaagaagggat
aacatgaagtggtgtggaacaactgcaaactatgacaccgatgggaggtttggcttctgt
cccatggcagaacatgaagaggtttgcaccaattcagaaggggttatgtatcacattgga
gaccagtgggacaaaaagcacgagcagggtcacatgatgaggtgtacctgtcatggcaac
ggccgcggtgaatggacctgcatcgcacatgctcaactgcgagatcagtgcgtggtggat
ggaattacgtacgaagtggaccagaccttctacaaacggcatgacgagggtcaccagatg
aactgcacttgctacggtcaaggccgggggcgatggaagtgtgatgccatcgatcagtgc
caggacaccgagacgaggcagttttaccagatcggcgagagctttcaaaagtaccgggat
ggaatccagtacctgtgccactgctacggccggggaatcggagaatggtcctgtcagcca
cagtcagcctcaccaggacctatcaaagtgctgatcacggaggctgggaaccagacgaac
tcacatcccatcctttggaacaaaccggaatcgtatcacatcgtccggtacatcctgaaa
tggaagcctaaaaactcgagggagcgatggagggaggtgaccattccaggtgacacctac
tcgtacaccatcagggatctgaaacccggcctcacctatgaaggccagctggccagcaag
ccgcagtacggccggacaatggtcaccagcttcgagttcacaacctcctacgtgacactg
tctccgactcagggtgagacagaactgttgccggaaggagacatcattagggagtcctcg
accacagaatccatcaccgaggtcacctccagcagcttcgtggtgtcctgggtgactgcg
tctgacacggtctctgggttccgcatcaagtacgagcttagcgaggacgatgctcagcct
cagtaccttgatgttccaaacacagtcacatctgtttccattcccaacctgctgcccggc
cgcaagtacatcgtgaacgtttatgaagtctcggaagatggggagaagctgatcctaacc
aagacgcccacgacagctcccgacagtcccacagagtacacagttgaccacgtcgatgag
acctccatcaccattgaatggtccaggcctcaagccccgatcacaggttaccgtgtggtg
tacacgccgtcagtggaaggagccagcaccgagatcattctgcccagcacctcgaccaac
ctgaccctgaccgacctgctgcctggcatccagtacaacatcagcatctacgccgtggag
gagagccaggagagtgtcccgctggtcatccagcagaccaccggtggcgtccctcttcca
gtggtggtggagacccccagcaacctgcagttcatcgatgtgtcagagaacaagatcacc
atcatgtggaacgcccctcgcaccgaggtcaccgggtaccgcgtcaccgtgctggccttg
gacaggcctggccgccggcccaccgagctgcccagatccaccaacaactttgccgagatc
accaggttacagcccggcaccacctatcgcttctccatctacgccgtgaaccgtgaggcc
gagagccggcctctggttggacagcagaccaccaagctcgatgctcccaccaacctcagc
ttccgaaacatcaccgagaccaccgcgctggtgacctggactccgcctcgagcccggata
accggatacctcctgacctggggcctgaccaccaacgggcagcccaagagcctccgcctc
aagcccggcactacccaccaccggctgttcaagctactgcctggagccgagtacgtcgtc
gccctcaccgcgaagcaggacgacctgtcgagccagagggtccacgacgttctaacaacc
ctggagaccatgggcccggtgccaaacatcaacacagaggtgacggacacagctattatc
gttacatggacacccatgcccaggatatcattccgggtgggggtccgacccagccaaggc
ggagaaacccctcgggaagtgaccagcgactccgggagcatcatcatctccagcctgact
cctggtaccgagtacaccgtctccatcacgctgctggtcaacgaccaggaacgggacagg
cccgtcaccaagactgttgtcaccgaactgtccccgcccaccgacctacaggtctacccc
gatccgaccacgggagagctgacggtgacttggcgcgagggaccgtcgccagatatcact
ggctaccgagtgacctgtgtcccgaaaccgggccaacagggcaaccttctcgaggaattt
gtcgaaccgggacagacctcctggatccccgagaacctgactcccggagttgaatacaac
gtcagcgtttacaccgtcaagaacggcaaggaaagccagcctgcgtccgcggtgataacc
caagaaatcccccaactcactgacctgaccttcgttgacgtaagtgacacgagcattggc
ctgcaatggacaccactaaacttttcggccatcactggctaccgcatcactgtcatagcg
gcgggggagtcggtccccattctcgaagactttgtcagctcgtcgacgggatactatacg
gtgcaaggcctggagcccgggatagattacgacatcagtgttatcaccctgatagagggt
cgcgcgagtgtcaccaccacacgcaagcagcaaaccgcggtgccacctcccaccaacctg
cgtttcacccatgtgggggcagacaccatgagagtcagctggtcagcccctccctccatc
gacctcagcaacttcctggtgcgctacagacccgtgggagatgaggaggggccaactgac
ctgaccatcaccccttctaacagcatggtggtactgacagggctccagcctggcacagag
tacctggtgcaggtgtactgtgtgatcgacgagagagagagcactccactgagtggcact
cagcgaacaggcatcgactcaccaactggcatcgacttctccggtgtggcgaccacctct
ttcaccgtgcactggctgccccccaaagcccgcgtcaccagctaccgggtgcggcaccag
ctcgagggcagcaccaggcccaaggacgagcgggtgccggcctcccgcacctccctgctg
ctcaccaacctggccccgggctcggagtacgtcgtcagcatctacgcctacaacggccgg
caagagagcctgcccctggttggccagcagtccacaatctccgattctccgactgacctg
gaattcacccgttccacgcccaagagccttaccatcagctggaagccaccacccgtgact
gttaaattctaccgtatcgctttcggagagtcaggaggccgtggaccagtgaaggagata
accgtaccgggggccgattccactgccaccatctccggcctgcgcccgggcaccgagtac
acggtgactgtctacgccgtcaccggccgcggagacagcccggcgaccagcaagccagtc
gtgggctccgagaagacagagatcgacatgcccacttcattgaaggtgaaggaagtgcac
gacaacagcctgaccatcagctggaagccccccgtcgccccggtgaccagctacagagtc
accagtgccccgaaggatggcatcggcccagtgatatctcacaccgtcccggcaggtcag
tctccagaggcgccactggtgggcctgaggcctggcaccgagtacacagtgcaggtgtat
gccctatacgatgaccaggagagcacccctctgataggcacccagagcacagccgttccg
cctcccaccgacctggaattcgttcaggtgactccgacgagcatgaccatcgcctggcac
gcacccgacaccgatctgaccggttacagggtggtggtgaaaccaagggagaaagccggg
cccagcaaggagctgaatctgggcccagacaacaccagcgccaccgtctctgggctcatg
gttgcaactaagtacaacatctttgtgtacaccatcaagaatatcttgaccagcaggcct
ctgcaaggcatcaaagcaacactggacgacgtcggctctcctcggaaaatccgtgtcagc
ggggtgacggagaccagcatcaccctgcagtggcgcaccaaggctgaaaccatcaccggc
ttccagatcgacgccattcccaccggcgggcaaagcccagtgcagaggactgtggggccc
aaccagaggtcgtacaccatcacaggcctactgcccggcaccgagtacagcattaacatc
tactcgctgaatggcgactctcgcagcaccccctcctcggtcatagctcggactgccatc
gactctccatccaacctgcggttcatctccacgaccaccaacagcatcatgttcacatgg
cagcggccgcgtgcccgcatcaccggctacatcgtcacctaccatgccaagggggagcgc
ccagtggagctctatccgcgacccaccatcaacacccacgaagcggtgattacaggacta
cggcctggaactgaatacaccatcaacatcagagctgttcagaactctctgcagagcgag
ccactgagcgggaagaaaatcacaggacccagcgacgggggtcagaggccgtcggtcgag
caaggaggcaggaccaccggccagcccgatgaccggtcgccgctgccaagaccggtcagg
cccgaggacgacgagaggaggaccaccagccccggtcgcggcagccaaggtaccggcgcc
gagggcccctaccaccagggccccaccagccccacccactcgcaagggctggtggtggag
gaggaaggcctgcccaacgggcacgggcgccagcccaagaccatcatctcctggcaaccc
agcaccgtcgcctgggagtacctggtcacgtgccaccctgtgggccagaaggagaaagtt
ttcgagctccgggtaccgggcacatcgacgtacgctgtgctgcccaacctcgtgttaggg
acgcagtacaaggtcctggtggaggccatagatgcggaagggaagcacaagatcctggag
gaagtcatcacggtcggaagtacctctcccgaccaagcctcccacctcatccccgatgaa
tcctgcttcgacacggccacaaactcccactacgccatcggccaggagtgggagcgaatg
tcagagactggtttcaaactctggtgtaaatgcttaggctatggaagtggtcatttcagg
tgtgactcaactaaatggtgccacgacaacggccagaactacagagtcggcgagaagtgg
aaccgccgcggcgacgggggccacatgctgagctgcacttgcctgggcaatggcaaaggg
gaatttaagtgtgaaccgcacgaagctacttgctacgacgaggggaacatgtacaacgta
ggggaacagtggcagaaggagtacctcggtgccatctgtacatgcacttgcttaggaggg
caacagggttggcgatgcagcaactgccacaggcccgggtttgacccgctggtagatgga
actaacagccagtcatctgagtcatcattgtcccagtatacacagataagacacggaaca
aggtacatacactgcccggtggaatgcaggagccaggggagtttgctggctgactctggg
cagctggagtag
DBGET
integrated database retrieval system
