Rhincodon typus (whale shark): 109922749
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Entry
109922749 CDS
T06055
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109922749
03041 Spliceosome [BR:
rtp03041
]
109922749
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
109922749
Spliceosome [BR:
rtp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
109922749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
RRM_NFXL1
RRM_Nup35
DUF1203
Motif
Other DBs
NCBI-GeneID:
109922749
NCBI-ProteinID:
XP_020378372
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All DBs
Position
29:842783..870575
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AA seq
575 aa
AA seq
DB search
MDGIVQDITVGTKRGSDELLSACATNGPFIMSNSAPSGEYTNGNDSKKFKAENRTSGILP
SRVIHIRKLPNDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVSYYSTV
TPYLRSHPIYIQYSNHKELKTDSSPNQARAQAALQAVNAVQTANMAIAGGGVSDSAAGLA
GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADGSSAQHAK
LALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPTLDQTMAAAFG
KEASLLGAPGIISSPYGGGAGFPPSIAFQQADFLQHPSDYWLSVPGVHGALAPLGMPSAA
AAAAAAASRIGIPGFASAANAVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKEN
ALVQMFDCTQAQLAMSHLNGQRLHGKAMRVTMSKHQTVQLPREGQEDQGLTKDYSSSPLH
RFKKPGSKNFQNIFPPSATLHLSNIPPSITEEDLKLLFSSTTGMVKAFKFFQKDRKMALI
QMSSVEEAIQALIDLHNHDLGENHHLRVSFSKSTI
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggacggcattgtccaagatataacagttggtacaaagcggggatctgacgagcttcta
tctgcttgtgctactaacggtccctttatcatgagcaactctgctccctctggtgagtac
accaatggcaatgacagcaaaaagttcaaagccgagaatagaacttcaggaatattacct
tccagagtcattcatatccgcaaacttcctaatgatgtcacggaggcagaagtcatctcc
ttgggcctgccttttggcaaagtgaccaatcttctcatgttaaaaggcaaaaaccaggct
tttatagaaatgaatactgaagaagctgctaacacaatggtgagctattatagcactgtg
actccatacctgagaagccatcctatctacattcagtattctaaccacaaggaactgaag
actgactcctctcctaatcaggctagagcacaagcggctcttcaagcagtaaatgctgtg
cagactgctaacatggctattgctggtggtggtgtatcagacagtgcagctggtcttgct
ggtcagagccctgttcttcgcatcattgtggaaaatctcttctatcctgttactctagat
gtgcttcaccagattttctccaagtttggcactgtactgaagatcatcacttttacaaag
aataaccagtttcaggccttgctccaatatgctgatggctcgagtgcacagcatgcaaaa
ctggccctagacggacagaacatctataacgcctgctgcactctgcgtattgacttctcc
aaattgactagtcttaacgttaagtacaataatgacaaaagcagagactacacgcgtcct
gacctaccatctggtgacaatcagccaaccttagaccaaaccatggcagccgcttttggt
aaggaagcctccctactaggtgcaccaggtatcatctcctcgccttacggagggggagct
ggtttccctcctagtattgccttccagcaagctgacttcctccaacatccatcagattac
tggctgtccgtcccaggggttcacggagccttggctccactcggcatgccgtcagcagca
gcggctgctgcagcagcagccagtcgtattggcattccaggatttgcctctgcagccaat
gctgtcctgcttgttagcaatctcaatcctgagagagttacgccccaatgcctctttatt
cttttcggagtgtatggtgatgtgcagcgtgtgaagatacttttcaacaagaaagaaaat
gccttggtgcaaatgtttgactgtacacaagctcaactggctatgagccatctgaatggt
caaaggcttcatgggaaggcaatgcgagtgactatgtccaaacatcaaacagttcagctt
ccccgtgagggccaggaggatcagggactgaccaaggattacagcagctctccgctgcat
cgcttcaagaaacctgggtcaaaaaacttccagaacatctttcctccttctgctacactt
catctctccaatattccaccttctataactgaagaagatttgaaattgcttttttcaagc
acaactggcatggtcaaagcattcaagttctttcagaaggatcgtaaaatggctcttatc
cagatgagttcagtggaagaagcaatccaggctctcattgaccttcataatcatgacctt
ggagaaaaccatcacctcagagtttctttctccaagtcaactatctaa
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