Rhincodon typus (whale shark): 109922938
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Entry
109922938 CDS
T06055
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109922938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109922938
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109922938
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109922938
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109922938
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_CCCH_4
Torus
zf-CCCH_RBM22
zf-CCCH_12
zf-CCCH
zf-CCCH_4
zf-CCCH_3
zf-CCCH_10
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
109922938
NCBI-ProteinID:
XP_048467067
LinkDB
All DBs
Position
23:complement(18843897..18848947)
Genome browser
AA seq
134 aa
AA seq
DB search
MQELIAGLQMMRFDFEIVLEQQRGIMDLPFSGMDKSSSAVCELFIKGKCLKEQMCPFRHL
CGDKNIVCKHWLRGLCKKGDQCEFLHQYDETKMPRCYFYSKYGKSIKHKSRWKPFNPSTL
LCHSMSSQLIYFHT
NT seq
405 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagttgatagctggtttacagatgatgagatttgattttgaaattgttttggag
caacagagaggaattatggatttgccattttctggcatggataaatctagttcagcagtt
tgtgagcttttcattaaaggcaaatgcttaaaagaacaaatgtgcccatttcgacacttg
tgtggtgacaagaatattgtatgcaaacactggctccgaggcctatgtaaaaaaggagat
cagtgcgagtttttgcaccagtatgatgagaccaagatgccacggtgctacttctattca
aaatatggtaagagcataaaacataagagcagatggaaaccattcaacccatcaactctg
ctctgccactcaatgagctcacagctgatttatttccatacataa
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