Rhincodon typus (whale shark): 109923474
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Entry
109923474 CDS
T06055
Symbol
nxf1b
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03008
Ribosome biogenesis in eukaryotes
rtp03013
Nucleocytoplasmic transport
rtp03015
mRNA surveillance pathway
rtp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109923474 (nxf1b)
03015 mRNA surveillance pathway
109923474 (nxf1b)
03008 Ribosome biogenesis in eukaryotes
109923474 (nxf1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109923474 (nxf1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109923474 (nxf1b)
03009 Ribosome biogenesis [BR:
rtp03009
]
109923474 (nxf1b)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109923474 (nxf1b)
mRNA cycle factors
Stress granule specific factors
109923474 (nxf1b)
Ribosome biogenesis [BR:
rtp03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
109923474 (nxf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_4
YopE_N
LRR_9
Motif
Other DBs
NCBI-GeneID:
109923474
NCBI-ProteinID:
XP_048475743
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All DBs
Position
43:4865108..5020748
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AA seq
654 aa
AA seq
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MSEDGRHYSAPQQSGIVHNGFRGEGRKQGRRKWRLRKKDTYGEHDDRVGGGFPVRKKKGR
GPFRGKMYSEGSHKSRNRGSGGPNPRSRFEDDDGDVTMNDHESPRSRFTPYGPRPSRRPD
SWHDRDGGPSSIQVTVKQNSERNASANTRRTWFKITIPFGKKYDKSWLLSNLHNMCSVPF
TPVQFHYDGNKAVFYVEDSTTANALKQISRRIVDKDLYRVAIMINPSVPPSSVSNELKSE
EIEHIKQCMSKRYDGSQQALDLNSIRSDPDLISQNIEVVLNRRSSMSTVIKIIEENIPEL
LSLNLGNNRLYRLEDLADLITKAPSLKILNLSRNELKSERDLDKIKGFKLEELWLDGNPL
CDSFRDQATYVSAVREKFPKLLRLDGHELPPPISFDVETPTTLPSCKASYFGTDEIKVLV
SRFIQQYYSVYDSTDRQGLLDAYHDTACCSLSIPFSPQNPARSSLGEYFKESRNVRRLKD
PTLRAKLLKHTRLNVVAFLNELPKTQHDIASFVVDVSTQTNTLLCFTVHGVFKEVDSKSR
ESVRAFSRVFIAVPAGNAGLCIVNDQLFIRNATTEEIRKAFVTPAPTPSSSPVPTLTAPQ
QEMLQAFSQQSGMNIEWSQKCLQDNEWDFNQAAQIFTQLKAEGKIPEIAFVKQL
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaggacgggcggcactacagcgccccccagcaatcaggaatcgtgcataatgga
ttccggggggaaggaagaaagcaaggaagacggaaatggagactgagaaaaaaagacacg
tatggagaacatgatgaccgagttgggggtggttttcctgttcggaaaaagaaaggacgc
ggtccattccggggaaagatgtacagtgaaggaagtcacaaatccaggaatcgaggcagt
ggaggacccaacccacggtcacggttcgaggatgacgatggcgatgtgaccatgaatgac
cacgagtcaccaaggtcacgatttacaccctatggtccaagaccatctcgtcgcccagac
agctggcatgatcgtgatggagggccctcaagcattcaagttactgtgaagcaaaattcg
gagagaaatgcaagtgccaatacacggcgaacctggtttaaaatcactattccctttgga
aagaaatatgataaatcctggcttttgtcaaacttgcacaatatgtgcagtgttcccttt
actcctgttcagtttcactatgatggtaataaggcagtattctatgttgaagattctaca
actgctaatgctttaaaacagatatcgagaagaattgttgataaggatttataccgggtg
gccatcatgattaatccttcagtgccgccatcttctgtttcaaatgagctcaaatcagag
gagatcgagcacataaagcagtgtatgagtaaacgttacgatggatctcagcaggcccta
gacctaaacagcatacgtagtgacccagacctcatctctcagaatattgaagtggtgtta
aacaggaggagttccatgagcacagtcatcaaaataatagaggagaacattccagagttg
ctctcgctcaacctgggcaataaccggctctaccgactggaagacctggcagatctgatt
accaaagcacccagtttgaaaattttaaatctttccagaaatgagctcaaatctgaaaga
gatctggacaaaataaaaggcttcaagctggaagagctgtggttggatgggaaccctctc
tgtgacagcttccgggatcaggctacttatgtcagtgctgtcagggaaaaatttccaaag
ttactcagactggacggccatgagctcccacctcccatttcctttgatgttgagactcca
accacgcttccttcatgcaaggctagttactttggtacagatgaaatcaaagtgcttgta
tcaagattcatacaacagtactattcagtttatgattcaacagacaggcagggactgctg
gatgcctaccatgatacggcttgctgctcgctcagtattccattttctccacagaaccct
gccaggagcagtctgggagagtatttcaaggagagtagaaacgtgaggagactgaaggac
ccaacacttcgggcgaagctgctgaaacacaccagactaaatgttgtagcctttctcaat
gaactcccaaagacacagcatgacatagcttcctttgtggtggatgtaagcacacaaaca
aatacattactctgttttactgtacatggagttttcaaagaagttgatagtaaatctagg
gagtctgtgagggcgttctcaagagtgttcattgctgtacctgctgggaatgcagggctc
tgcattgtgaatgaccagctgttcatcaggaatgccaccaccgaggagatccgcaaggcc
tttgtgacgccagcgcccacaccgtcaagcagtccggtgcctaccctcacagcgccacag
caggaaatgttgcaagccttttcccagcaatcgggcatgaacatagagtggtcacaaaag
tgtctgcaagataacgagtgggacttcaatcaagctgcccaaatcttcacacagcttaag
gccgaaggaaaaattcctgaaatagcgttcgtgaagcagctttga
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