Rhincodon typus (whale shark): 109923536
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Entry
109923536 CDS
T06055
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109923536 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
109923536 (dhx16)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109923536 (dhx16)
Spliceosome [BR:
rtp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109923536 (dhx16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
T2SSE
PWI
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
109923536
NCBI-ProteinID:
XP_048472943
LinkDB
All DBs
Position
35:complement(13239791..13274317)
Genome browser
AA seq
1036 aa
AA seq
DB search
MTSLEKWVNDQLHQLLGLSDKYVAQFLIGTAQRSDSVADFIRRLEETGTIDITQGVRRFA
DELWTKIPRKEKVEKAARAVEREALALQQKNRTYLLLEDSEDSGPEEKQSHNKSKRKRKH
IRKKRAASSESDSDDKTARNPSPQKLSGSEEEEWEKEEKDRLKDLEERDAFAERIKQRDK
DRTRNILERSDKKAYEEAQKRLKMGEEDRRAMIPELRKKSRRDYLGKREQEKLEDLEAEI
LDDEYLFSSTELSTREKQQLEYKKKVRDLAREYKAAGDQEKQEQSNRYYMPEESRSKKVP
DRYEEPKADDKHAPRDEQRRWEEEHMDAALLKFGARDARERNQQKEYEFVLEEDEMIDFV
TAVTMQGTVTKDEKAEMSEAQKQKMTLQEVRKSLPVFPYRQDLLAAIAEHQILIIEGETG
SGKTTQIPQYLYEEGYTAGGMKIGCTQPRRVAAMSVAARVAQEIGVKLGNEVGYSIRFED
CTSERTVLKYMTDGMLLREFLTEPDLAGYSVVIIDEAHERTLHTDILFGLIKDISRFRPD
LKVLIASATLDTEKFSTFFDDAPIFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHVT
QAPGDILVFLTGQEEIETTCEMLQDRCRRLGSKIAELLVLPIYANLPSDMQAKIFEPTPA
GARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIVTPCSKASANQRAGR
AGRVAAGKCFRLYTAWAFKHEMEETSVPEIQRTNLGNVVLLLKSLGINDLIHFDFMDPPP
HETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILASERYQCSEEILTIAA
MLSVNNAIFYRPKDKVVHADNARMNFFLPGGDHLVLLNVYTQWVESGYSTQWCYENFIQF
RSMRRARDVRDQLEGLMERIEIEMKSSAGDNVLIRKAITAGFFYHTARLTRTGYKTVKHQ
QVVYVHPNSCLFEEQPRWLIYHELVFTTKEFMRQVIEIDSNWLLEVAPHYYKSKELQDAA
SKKMPKKVGKTREELG
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgctggagaagtgggtgaatgaccagcttcaccagctgctggggctgagcgat
aagtatgtggcacagttcctgattggcactgcccagcgcagcgacagcgtggcagacttc
atccggcgcctggaggagacgggaaccattgacatcacacagggagtccgacgctttgca
gatgagctctggacaaagatccccaggaaagagaaagttgagaaggcagcacgtgccgtc
gagcgagaggccctcgcgttgcagcagaagaaccggacctacctgttactggaggacagt
gaggacagcggacccgaggagaagcaaagccacaacaaaagcaaaagaaaacggaaacac
atccgcaaaaagagggcagcgtcttcggagagcgactccgatgacaaaacggccagaaac
ccgtcgccgcagaaactgtcaggatctgaagaagaagaatgggagaaggaggagaaggat
cgcttgaaagatctggaggagcgagatgctttcgccgagcgtatcaagcaacgggacaag
gacaggacccgaaatatcctggagcgctctgataagaaggcctacgaggaagctcagaaa
cgtctgaagatgggggaggaagatcggcgagccatgattccagagctgcgcaagaagtcc
cggcgggattacctgggcaagcgagagcaggagaagctggaggacctggaggcagaaatc
ctggacgatgagtacctgttctcctcgactgagctcagcacccgggagaagcagcagctg
gaatacaagaagaaagtgcgcgacctggcccgggagtacaaagctgccggagaccaggag
aagcaggagcagagcaaccgctattacatgcctgaggagtcccgcagcaagaaagttccg
gatcgctacgaggagcccaaggcggacgacaagcacgccccgcgggacgagcagaggcgt
tgggaggaggagcacatggacgcagcactgttaaaatttggagcccgggacgccagggag
cgtaaccaacagaaggaatatgagtttgtgctggaggaggatgagatgattgactttgtg
acggccgtgaccatgcagggaaccgtgactaaggatgagaaggcagagatgtcagaggca
cagaagcagaagatgaccctccaggaggtgaggaaaagcctgcctgtcttcccctaccgc
caggacctgctggcagctattgctgagcaccagatcctcataatcgagggcgagacgggc
tctggcaaaacaacccagatcccccagtatctgtacgaggagggctacacggccgggggg
atgaagatcgggtgcacgcagcctcggcgtgtggcagccatgagcgtggcagcccgagtg
gcacaggagatcggggtcaagctgggaaatgaggtcggctacagtatccggtttgaagac
tgcacgtcagaacggacggtgctaaagtacatgacagatgggatgctgctgagagaattc
ctaacagagcccgacctggctggatatagcgttgtgatcattgacgaagcgcacgagcgc
acacttcacactgacattctcttcgggctgattaaagacatctcccgcttccgccctgac
ctgaaggtcctgatcgcgagtgccacactggacacggaaaagttctcaacgtttttcgac
gacgcaccaatctttcgtattccagggcggcgattccccgttgatatttattacaccaag
gcccctgaagcggactatctggaagcctgcgtggtttcagtgctgcagattcacgtcact
caagctcctggcgacattctggtgttcctcaccggtcaggaggaaatcgagaccacgtgc
gagatgttgcaggaccgatgccgtcgactgggctccaagattgccgagctgctggttcta
cccatttatgccaacctcccctcagacatgcaggccaagatctttgagccgaccccggcc
ggtgccaggaaggtcgttgtcgccaccaacatcgcggagacctccctgacgatcgacggg
atcatctacgtgatcgatcctggtttctgcaagcagaagagttacaacgcacgcacgggc
atggagtctctcatcgtcacgccctgctccaaggcttcagctaaccaacgagccggcagg
gctggccgcgtggcagcagggaaatgcttccgtctctacaccgcctgggccttcaagcac
gaaatggaggaaacgtcggtcccagaaatacagcgaacaaacctgggcaatgtggtgctg
ctgctgaagagcttgggaatcaacgatttgatccactttgatttcatggacccccctcct
catgagaccctagtactagccttggagcagctgtatgccctgggggctctcaaccatctt
ggagagctcaccaagctcggtcgcaggatggcagagctccctgtcgatcccatgctgtcc
aaaatgatcctagcctccgaaaggtatcaatgctcagaggaaatcctaaccatcgcagcc
atgctgtcggtcaacaacgctattttctatcggcccaaagacaaggtggtgcatgcggac
aatgctcgcatgaacttcttcctacccggaggggatcatttggttctgctcaatgtctac
acacagtgggttgaaagcggctactccacgcagtggtgttacgagaatttcattcagttc
cgatcgatgaggagagccagggatgtgcgggaccagttggagggtctgatggagagaatt
gaaatcgagatgaaatcatccgcaggcgataacgtccttatccgcaaggccattaccgcc
ggctttttctaccacaccgctcggctcacacgcaccggctacaagacagtgaagcaccag
caggtggtctacgtccaccccaacagctgcctgtttgaagagcagccccgctggcttatt
tatcacgagctcgtcttcaccacaaaggagttcatgagacaggtgatcgagatcgacagc
aactggctgttggaggtggccccgcattattacaaatcgaaggagctgcaggatgcggcc
agcaagaagatgcccaagaaagtgggcaagacccgggaggagctcggctga
DBGET
integrated database retrieval system
