Rhincodon typus (whale shark): 109923691
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Entry
109923691 CDS
T06055
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109923691 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109923691 (taf5)
03036 Chromosome and associated proteins [BR:
rtp03036
]
109923691 (taf5)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109923691 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
109923691 (taf5)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
109923691 (taf5)
STAGA complex
109923691 (taf5)
TFTC complex
109923691 (taf5)
SAGA complex
109923691 (taf5)
SLIK complex
109923691 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_Nup120_160
VPS8_N
Cytochrom_D1
PROPPIN
ABM-like
Beta-prop_WDR11_2nd
RAB3GAP2_N
Motif
Other DBs
NCBI-GeneID:
109923691
NCBI-ProteinID:
XP_048465032
LinkDB
All DBs
Position
20:complement(39933028..39947198)
Genome browser
AA seq
791 aa
AA seq
DB search
MAAVSEPVAAQSEAPAPAPTPAPAPIPTPTPTPTPAPTPTPTPTPTPAPTPAPATAPTPG
AGPAPSSSPVPAPVPTPSPAPSPSPTPSPTLIPKLEPSESPAENHKPGPAAGPATAPCPA
TAVGPAPGPGPELPDKQTLLAVLQFLKKNHFKEAEEILRKEANLQESLDESLLRTAGHRG
SDSVHQPDVSSVLSAYSNEGDPSLYEEYYTGLKGFIETALDAFKAELSTLLYPVFVHLYL
ELVYNEHEREARHFFHKYHGDQEGYYHDDLRVLAGLSKKEHMQGNETVLDFRTSKFVLRI
SRDSYQCLKRHLQERHNNQIWNIVQEQLFIDVFDGMPRSKQQIEVTSGGMAGEAKREANK
TKVFFGLLKEPEIELPLDDEDEEGENEEGKPKKKKPKKDSLGAKSKKQDPNAPPQNRIPL
PELKDSDKLDKIMIMKEATKRVKLGPDCLPSICFYTFLNAYQGLTAVDFTDDSSLIAGGF
ADSTVRVWSVTPKKLRSVKGATDLSLIDKESDDVLERIMDEKTACEFKMLLGHGGPVYGT
SFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFISGGHDRVA
RLWVTDHYQPLRIFSGHLSDVTCTRFHPNSNYVVTGSADRTIRLWDVLNGNCVRILTGHK
GPIHSLVFSPNGRYLASGATDGRILLWDIGHGLLVGELKGHTDTIYALKFSRDGEILASG
SMDNTVKMWDTVKAFEDLETDDFSTATGHINLPDNSQELLLGSYMTKSTPVIGLHFTRRN
LLLAAGAYNPQ
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtgtcagagccggtggcagcgcaaagtgaggccccggccccggccccaacc
cccgcccccgccccaatcccgaccccaaccccaaccccaaccccagccccaaccccaacc
ccaaccccgactccaactccagccccgaccccagccccagccacagccccaactccgggc
gcaggccctgctccctcctcttccccagtcccagccccagtcccgacaccttctcccgct
ccttctccgtcccccactccctctcccaccctgatccccaagctggagcctagtgaaagc
ccggccgaaaaccataagcctggcccggccgcaggcccagctacagctccgtgccccgcg
actgctgtaggcccggctccaggtccaggaccagagctgcccgacaagcagacactgctg
gctgtgctgcagtttctgaagaagaaccacttcaaagaggccgaagagatcctcaggaag
gaggccaacctgcaggagagcctggacgagtcgctgctgaggacggctggccacaggggt
tcggactcggttcatcagcccgatgtcagctcggtcctttcggcctacagcaatgaggga
gacccgagcctgtacgaggaatactacactggcctcaagggcttcatcgagacggcgctg
gacgccttcaaagccgagctgtccactctcctgtacccggtcttcgtgcatctttacctg
gagctggtttacaatgagcatgagagggaagctcggcatttcttccacaagtatcatggg
gatcaggaaggttattaccatgatgacctgcgagtgttagctggcctgtcaaagaaggaa
cacatgcaggggaacgagacagtgctcgattttcggaccagtaagtttgtgttacggatt
tcacgggattcgtaccagtgtctgaagcgtcacttacaggagaggcataataaccagatc
tggaacatcgtgcaggagcagctgttcattgatgtatttgatgggatgccgaggagcaag
cagcagatcgaggtgacttctgggggaatggctggagaagcaaagagggaggcaaataaa
accaaggtattctttgggttgttgaaggaaccagagattgagcttccacttgacgatgaa
gacgaggaaggagagaacgaggaggggaaaccaaagaagaaaaaaccaaagaaagatagc
ctgggtgcaaagagcaagaagcaggaccccaatgccccacctcagaacagaattccactt
cctgaactaaaagattctgacaaactggacaagataatgataatgaaagaagccacaaag
cgggtgaagctggggccggactgcctgccctccatatgcttttacacgtttctgaatgct
tatcagggactcactgcagttgacttcacagatgattctagtctgatcgcaggaggattt
gctgattccactgtcagagtgtggagtgtcacaccgaagaagctgcgcagtgtcaaaggg
gctacagatctcagtttaattgataaagagtcagacgatgtgctggagcgaataatggac
gagaagactgcctgtgagtttaaaatgctactgggacatgggggcccagtttatgggaca
agtttcagtcccgacaggaactacctgctgtccagttccgaggatggcacagtgagactc
tggagtctgcaaaccttcacctgccttgtgggctacaaaggacataattatccagtatgg
gatacacagttttctccatatggctactacttcatttcagggggtcatgatcgagtggca
cggctttgggtgactgaccattatcagccactgcgaatattctctggtcacctgtctgat
gtcacctgcacgagatttcatcccaactcaaattatgtagtgacaggatctgcagacagg
accatccgactgtgggacgttctaaatggcaactgtgttcgaatcctcactggacacaag
ggaccgatccactcattggtgttctctccaaacggtagatacctggcctctggggctaca
gatggccggattctgctatgggatatcgggcatgggttacttgtaggcgagttgaaaggt
cacactgatacgatctacgcactgaagttcagccgagatggggagattctagcctctggt
tcaatggataatacagtgaaaatgtgggacacagtcaaagcctttgaggatctggaaaca
gatgatttcagtactgccactgggcatattaacttgcctgacaactcacaagagctgtta
cttggctcctatatgactaaatccaccccagtcattggcctgcacttcactcgccgtaac
ctcctactggctgcaggggcatacaacccacagtga
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integrated database retrieval system
