Rhincodon typus (whale shark): 109923752
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Entry
109923752 CDS
T06055
Symbol
vps36
Name
(RefSeq) vacuolar protein-sorting-associated protein 36 isoform X2
KO
K12190
ESCRT-II complex subunit VPS36
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
109923752 (vps36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109923752 (vps36)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtp04147
]
109923752 (vps36)
Membrane trafficking [BR:
rtp04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
109923752 (vps36)
Exosome [BR:
rtp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109923752 (vps36)
Exosomal proteins of colorectal cancer cells
109923752 (vps36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
DUF1351
Motif
Other DBs
NCBI-GeneID:
109923752
NCBI-ProteinID:
XP_020379388
LinkDB
All DBs
Position
6:23646476..23697592
Genome browser
AA seq
386 aa
AA seq
DB search
MDRFVWASGLLEINETLVIQQRGVRLYDGDDKAKFDLGTLLLSTHRLLWRDHKKHDCCIA
LSLSQIIFFEEQAAGIGKSAKIVVHLQPVSPNKEPGPYQSSKYSYIKLSFKEHGQIEFYR
RLSEELSQKRWERISVSQPMQSPSRSQAGKVRAAGIVGIERKLEEKRKETDKNISEAFED
LSQLMKKAKEMVDLSKLIANKIKDKQGDISEDETIRFKSYLLSMGIANPVTRETHGSGTH
YHMQLAKQLVEMLQVPVEEQGGMMALTEVYCLTNRARGMELLSPEDLVNACKMFEALNLP
MRLRIFDSGVMVVQLQSHNEDEMIASAVETVSEKGFISSEEYAKLMGISVLLAKERLLLA
EKVGHLCRDDSVESLRFYPNLFLTED
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggatcggttcgtgtgggcgagcggactcttggagattaacgagaccctggtgatacag
cagcgcggagtccgcttgtacgacggtgatgacaaggcaaaatttgacttagggacactt
cttcttagtacacacagactgctatggagagaccataaaaagcatgattgctgcatcgct
ttatctttgtcacagatcattttctttgaggaacaggcagctggaataggaaaaagtgcc
aaaatagtagttcatcttcaaccggtttctcccaacaaagagcctggcccatatcaaagt
agcaaatactcttacatcaagttgtctttcaaggaacatggacagattgagttttataga
cgattatcagaagaattgtctcaaaagcgatgggagcgaatttcagtatctcaaccgatg
cagtcacccagtagatcacaagcaggaaaagtgagggctgctggaattgtgggtattgaa
aggaagttggaggaaaaacgaaaggagaccgacaaaaacatctctgaagcttttgaagat
ctcagtcaacttatgaaaaaggccaaagagatggtcgatttgtcaaaattaatagcaaac
aaaatcaaagataagcaaggtgatatttctgaagatgagactatccgtttcaagtcctat
ttgctgagcatgggcatagctaatccagttactagagaaacacatggatctggaacacat
taccacatgcaattggctaaacagctggtggaaatgttgcaagtgccagttgaggaacaa
ggtggaatgatggcactgacagaggtttattgcttgacaaaccgagctcgagggatggag
cttctttcaccagaagatttggtgaatgcttgcaaaatgtttgaggccctgaatctacca
atgaggttacgtatttttgatagtggagtgatggtggttcagttacagtcccacaatgag
gatgaaatgattgcttcagctgtggagacagtatcagagaaaggttttattagttctgag
gagtatgctaagcttatgggaatttctgtactcctggccaaagaaaggctactactagca
gagaaagttggccacctgtgtcgtgatgactctgttgaaagcttgcgattttacccgaat
ttgtttctgacggaagactga
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