Rhincodon typus (whale shark): 109923789
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Entry
109923789 CDS
T06055
Symbol
atg4b
Name
(RefSeq) cysteine protease ATG4B isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04136
Autophagy - other
rtp04140
Autophagy - animal
rtp04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
109923789 (atg4b)
04140 Autophagy - animal
109923789 (atg4b)
04136 Autophagy - other
109923789 (atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rtp01002
]
109923789 (atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109923789 (atg4b)
03029 Mitochondrial biogenesis [BR:
rtp03029
]
109923789 (atg4b)
Peptidases and inhibitors [BR:
rtp01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
109923789 (atg4b)
Membrane trafficking [BR:
rtp04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
109923789 (atg4b)
Mitochondrial biogenesis [BR:
rtp03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
109923789 (atg4b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
109923789
NCBI-ProteinID:
XP_048460186
LinkDB
All DBs
Position
13:68362668..68403096
Genome browser
AA seq
380 aa
AA seq
DB search
MPSQSFPPPMAHICWSVVFRGSSINKDEIFADVTSRLWFTYRKNFSPIGGTGPTSDNGWG
CMLRCGQMIFAQALICRHLGRDWRWVNGKQQRDEYYNILNAFLDKKDSYYSIHQIAQMGV
GEGKSIGQWYGPNTAAQVLKKLTFFDNWSSLAVHVAMDNTVIIDDIKMLCKSESPCAGAA
AAFPQTVGQRPFNGYPSGANCSEDTLAWKPLVLLIPLRLGLSEINEAYIKTLKKCFMMPQ
SLGVIGGKPNSAHYFIGYVDDELIYLDPHTTQPAVEPFDDFSIPDESFHCQHPPCRMSIC
DLDPSIAVGFFCSTEEDFNDWCKRMKMISQEKDALLMFELMDYQTARFPDVHCLTPDFTD
SERLERFFDSEDEDFEILSL
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgccatcccagtctttccctccacccatggcacacatttgttggtctgttgtatttagg
gggagttctataaataaagatgagatctttgcagatgtcacctcacggctctggtttaca
tacaggaagaatttctctcccattggaggcacaggacccacctctgataatggctggggc
tgcatgttacgatgtggacaaatgatctttgcccaggctctcatatgcagacatttgggt
cgagactggagatgggtaaacgggaaacagcaaagggatgaatattacaatatattgaat
gcttttcttgacaaaaaggacagctactactccattcatcagatagctcaaatgggagtt
ggagaaggaaagtcgattggtcagtggtatggtccaaacactgcagcacaagtattaaag
aagctcacattctttgacaactggagctcgttagctgttcatgtggcgatggataacacc
gtaataattgatgacatcaagatgttgtgcaaatctgagagtccgtgtgcgggggcagca
gcagcattccctcaaactgttggtcaaaggccgttcaatgggtatccttcaggtgcaaat
tgctcagaagacacattagcgtggaaaccattagtgttgctaatacctctaaggctggga
ctcagcgagatcaatgaagcatacatcaaaacgttgaagaaatgcttcatgatgccacaa
tctcttggagtcatcggtggcaaacccaacagtgcccattatttcatcggatatgtagat
gatgagctaatctaccttgatccacacacgacacagcctgcggtggagccatttgatgat
ttctctataccagatgagagtttccactgtcagcatcctccttgtaggatgagcatctgt
gacttggacccatccatcgctgtgggctttttctgcagcacagaggaggattttaacgac
tggtgtaaacgaatgaaaatgatttcacaggagaaggatgcattactgatgtttgagttg
atggattatcagactgctcgcttcccagatgtccactgtcttactcctgactttacagat
tctgaaagactggaacgattctttgattctgaagatgaagattttgagatcctttcatta
taa
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