Rhincodon typus (whale shark): 109924053
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Entry
109924053 CDS
T06055
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04140
Autophagy - animal
rtp04148
Efferocytosis
rtp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109924053 (vps16)
04148 Efferocytosis
109924053 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109924053 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109924053 (vps16)
Membrane trafficking [BR:
rtp04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
109924053 (vps16)
Hops complex
109924053 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_C
Vps16_N
Motif
Other DBs
NCBI-GeneID:
109924053
NCBI-ProteinID:
XP_048454677
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All DBs
Position
7:25696091..25752351
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AA seq
721 aa
AA seq
DB search
MFSEKEVLQNRVVDAKVFPTAYGSGVVILTGAFRFTLATNIDDLKLRRFPEVPGLLRPPT
CWTVLMQDRQPKIVLANGKDLYILDNASCTSVIPPGLGPQVCGFTQIAVSFNYKKLALYT
DTGNIWMGSSSFKDKLCIVETNFKTAPKQFVWCDRSKSNNPTVVGIWDKVLFITGESKET
IKSYQDEDIHLVPEVDGVRIISSSNHEFLHEVPPACQDIFKIASMAPGALLLEAHKEYEK
ESQKADEYLREIKEQNLLFEAVQQCIEAAGNEYEPEMQKSLLRAASFGKCFISNFPPDTF
VKMARDLRVLNAMRDYTVGIPLTYPQYKQLTIEILIDRLILRRLYPLAIRICKYMKISEL
QGASRILAHWACYKVQQKEEPDDSIARAINHKLGDTPGISYSEIAAKAYECGRIELAIKL
LEYEPKSGEQVPLLLKMKRSQLALLKAIESGDSDLVYTVVTYLKNEMNRGDFFMTLQNQP
VALSLYRQFCKHQEPETLKDLFNQDDNHQELGNFYVRSSYSNETTIEGRVAALQSAVDEY
NKAKNEFAAKITEEQIKLLRYQFRLQKESGKTYLDLSLHDTVQALLLESKHKQAEQLYKD
FKIPDKRFWWLKITALAEKEDWEELEKFSKSKKSPIGYMPFVEICVKHRNKYEAKKYVAK
VSPEQKVKGYIMVGDLEQAVETATERKNESELNIILSKCTAVTDQAIVEKINRAKAHILK
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgtttagcgaaaaggaggtgttgcagaatcgagttgtggatgccaaggttttccccact
gcttatggctcaggagttgttatattaactggtgcttttagattcacacttgccacaaat
atagacgacctcaaactccgaagatttcctgaagttccaggattactgcgaccaccaaca
tgctggactgtattgatgcaagatcgacaacccaaaattgttcttgcaaatgggaaggat
ttatatatcttagataatgcttcctgcacatctgtgattccacctggccttggaccgcaa
gtctgtggatttacccaaattgctgtttcattcaattataaaaagcttgctctatataca
gacactggtaacatttggatgggttcttcttcattcaaggacaaattgtgcatagttgag
acaaacttcaaaacagcacctaagcagtttgtctggtgtgatagatcaaaaagcaacaat
cctactgtagttggtatttgggataaagtactttttataacaggagaatcaaaggagacc
attaaatcttatcaagatgaagatattcatttggtgcctgaggtcgatggtgttcgaatt
attagttcttctaatcacgaatttctgcatgaagtcccacctgcttgtcaagatattttc
aaaattgcctcaatggcacctggtgcacttcttctggaagctcataaagaatatgagaaa
gagagtcagaaggcagatgagtatttacgagagatcaaagagcaaaacctcttgtttgaa
gctgtgcagcagtgcattgaggcagcaggcaatgaatatgaacctgagatgcagaagtct
ctgctgagggcagcctcctttggtaaatgcttcatcagcaattttccaccagatactttt
gtgaagatggcccgagatctgcgtgtattgaatgcaatgcgagactatactgtcggcatt
cctcttacttatccccaatataaacagctcactattgaaattctaatagacagattaatt
ttgcgtagactgtaccctcttgcaataaggatttgtaagtacatgaaaatatcagaattg
cagggagcaagtcggatcttggctcactgggcctgttataaggtccagcagaaggaagag
cctgatgacagcattgctcgtgcaatcaaccacaaacttggggacactcctggcatttcc
tattctgaaattgctgctaaggcttatgaatgtggtcgaatagagctggcgataaagctt
ttagagtacgagccaaagtctggtgagcaggtacccttgctgttgaagatgaaaaggagt
cagttagcactacttaaagcgattgaaagtggagacagtgatttagtgtatactgttgtg
acatacctaaagaatgaaatgaacagaggggatttctttatgacacttcagaatcaacca
gttgcactaagtctttatcgtcagttttgtaagcaccaagaaccagagacactcaaagat
ctattcaaccaggatgacaatcaccaagagcttgggaatttctatgtgcgttccagctat
tctaatgaaacgacaatcgagggacgagtagctgctttgcagagtgctgtagatgaatac
aataaagccaagaatgaatttgctgccaagatcacagaagaacagataaaattgttgcga
taccagtttcgcttgcagaaagaatctggtaaaacatatctagacttatcattacatgat
actgttcaagcattgttactggaaagcaagcacaaacaagctgagcaactttacaaagac
ttcaaaattcctgacaaaaggttttggtggttgaagattactgcactggcagaaaaagaa
gactgggaggaacttgagaaattttctaaaagcaaaaagtccccgataggatatatgcct
tttgttgaaatctgtgtaaaacatcgtaacaaatatgaagctaagaaatatgtagcaaag
gtcagtccagagcagaaagtgaaaggatatataatggttggagacctagaacaagctgtg
gaaactgcaacagaacgcaagaatgaaagcgaattgaacattattctttcaaagtgcacg
gcagtcactgatcaggcaattgtggaaaaaattaatcgagcaaaagctcatattttaaag
aaataa
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