Rhincodon typus (whale shark): 109924290
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Entry
109924290 CDS
T06055
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109924290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109924290
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109924290
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109924290
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109924290
U7-dependent histone pre-mRNA processing factors
109924290
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
RMMBL
Motif
Other DBs
NCBI-GeneID:
109924290
NCBI-ProteinID:
XP_020379891
LinkDB
All DBs
Position
5:103810025..103829292
Genome browser
AA seq
408 aa
AA seq
DB search
MAVYQTYVNAMNEKIRKQISINNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSR
ELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEVTTMSGQKLPLKMSVDYISFSAHTD
YQQTSEFIRALKPPHVLLVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLYF
RGEKLAKVMGSLADKKADQGQRISGILVKRNFNYHILIPSDLSNYTDLAMSTVTQTQAIQ
YSGSFMLLAQHLQIIADDVEEIEVQEKPALRVFKAITLVQEPGMVVLEWVANPLNDMYAD
AVMTVILEVQSNPKAQKVVQQNSSKKFDKEMYAKRLEIMLEDMFGQECVTKSKTSNTLSV
TVDGKAANISLDTRVVVCEEGSVEDEPLREMVEVAVQRLYETMHPALF
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggctgtataccaaacctatgtcaacgcaatgaatgagaaaattcgcaaacagatcagt
attaacaacccttttgtcttcaaacacatcagcaacttaaagagcatggaccattttgat
gacattggtccaagtgtagtgatggcttctccgggtatgatgcagagtggtttgtcccga
gaactgtttgaaagctggtgcaccgataagaggaatggtgtcattattgctggttactgt
gttgaaggcacacttgcaaagcatattatgtcagagcctgaggaggtaactaccatgtct
ggacagaaattaccattgaagatgtcagttgattacatctcgttctctgcacatacagat
tatcagcagaccagtgaatttatccgtgcattgaaaccaccacatgtgttgcttgtccat
ggtgaacagaacgaaatggccaggctgaaggcagcgcttatccgagaatatgaagataac
gatgaagttcatattgaagttcacaatccacgcaacactgaagctgtgacattatacttc
agaggcgaaaagctggccaaagtgatgggctccttggcagataaaaaggcagatcaaggt
caaaggatctcaggaatacttgtaaaaagaaacttcaactatcacatacttattccatct
gacctatccaattatactgatttggcaatgagcacggtgacacagacacaggccattcag
tactcaggatctttcatgctcctggcacaacaccttcagatcattgcagatgatgtggaa
gaaatcgaagttcaggaaaagccagcactgagagtcttcaaagctatcacactggttcaa
gaaccaggcatggttgtgctggagtgggtggcaaatccattaaatgacatgtatgcagat
gcagtgatgacagtgattctggaagtgcagtcaaaccctaaagcacagaaagttgtgcag
caaaactcaagcaaaaaatttgacaaagaaatgtatgcaaagaggctagagattatgctc
gaagatatgtttggacaagaatgtgtgactaaatctaaaactagcaatacactgtctgta
accgttgatggcaaggcagcaaatatttctctggatacacgggtggttgtgtgcgaagag
ggtagtgtggaggatgaaccacttcgagaaatggtagaagtggcagtacagcggctttat
gaaacaatgcacccagcactcttctga
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