Rhincodon typus (whale shark): 109924437
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Entry
109924437 CDS
T06055
Symbol
pax1a
Name
(RefSeq) paired box protein Pax-1a isoform X1
KO
K09382
paired box protein 1/9
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109924437 (pax1a)
Transcription factors [BR:
rtp03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
109924437 (pax1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAX
HTH_23
HTH_32
HTH_29
HTH_28
Motif
Other DBs
NCBI-GeneID:
109924437
NCBI-ProteinID:
XP_020380028
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All DBs
Position
9:complement(12342845..12350433)
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AA seq
368 aa
AA seq
DB search
MDQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY
NETGSILPGAIGGSKPRVTTPTVVKYIREYKQGDPGIFAWEIRDRLLADAVCDKYNVPSV
SSISRILRNKIGNLSTSGHYEAHKQLTPQPALPYNPLYQYSYPGHMPPAAAKVGSSAGVP
VPGHVGIHRTWPSAHSVSNILGLRSIVEQTAVHGGTETSVYQTKMEDWNNANRAAFSSTQ
SVNGIEKQAIDPDLKYPQPPSGLPAVSSFVPACAVGPYPSSNQVPGYGVYSGPGAGYMSG
HHWQSQSSSLSQSAGPGITMHGGDIHAPMPFKHLSAREAAERKPVSPVNKPTETLSSAHG
LSIPASST
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atggatcagacgtacggggaggtcaaccagctggggggcgtctttgtgaacgggagaccc
ctgcccaatgccatccgcttgcggatagtggagctggctcaactgggcattcggccgtgt
gatatcagccgtcagctccgggtctcccacggctgcgtgagcaaaatcttggcccgttac
aacgagactggctctatcctgccgggagctataggaggcagcaagcccagggtcaccacc
ccgacagtggtgaagtacatcagggaatacaaacagggagacccggggatcttcgcctgg
gagattcgggaccggttgctggcggacgcggtctgtgacaagtacaatgtgccctcggtc
agctccattagcaggatcctccgcaacaagatcggcaacctgtcgacctctggtcactac
gaagcccacaagcaactgacaccccagcccgccctgccttacaaccctctgtaccagtac
tcctaccccgggcacatgccccccgctgctgccaaggtgggcagctccgccggcgtccca
gtgcccggccacgttggcatccataggacctggccctccgctcactccgtctccaacatc
ctcgggctcagaagcatcgtcgagcagacagctgttcacggtggaacggagacttcagtt
tatcaaaccaaaatggaagactggaataacgccaatcgagcagctttctcgtcaactcaa
agtgtcaacgggattgagaaacaagcaatagacccggatctgaaataccctcagcctccg
tctgggctgccagctgtgagcagttttgttcccgcttgcgccgtgggcccttacccctct
tcgaaccaagtgccaggttatggagtgtacagtgggcccggagcaggctacatgagtggc
catcactggcagtcccagagcagcagcctctctcaatcggcagggcccgggattaccatg
cacggaggagacatccacgcaccaatgcccttcaaacacctctcagccagagaagcagca
gagagaaaacccgtgagccccgttaataaacccactgaaactcttagcagcgcgcacggc
ctctcaatcccagcctccagcacgtaa
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