Rhincodon typus (whale shark): 109924766
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Entry
109924766 CDS
T06055
Name
(RefSeq) cleavage stimulation factor subunit 2-like isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109924766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109924766
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109924766
U7-dependent histone pre-mRNA processing factors
109924766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
Motif
Other DBs
NCBI-GeneID:
109924766
NCBI-ProteinID:
XP_048460830
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All DBs
Position
14:complement(46692420..46758088)
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AA seq
647 aa
AA seq
DB search
MANLVRDPAIDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVLSFRLVYDRETGKPKGYGF
CEYQDQETALSAMRNLNGREFNGRALRVDNAASEKNKEELKNLGTAGPVMESPYGDPVSP
EDAPESISRAVASLPPEQMFELMKQMKLCIQNSPQEARNMLLQNPQLAYALLQAQVVMRI
VDPEIAMKMLHRPANVTPLISSGQPTAGPSAASVQAAPPVSQPQPMSGMHVNGAPMMQQS
MQAATSVPGPGPVQGPGGPVPGPGPGPGPGPGPVGPAGNMQPQMGLPPSGPVPMDRGQGN
MHSPVASAGTAQIERGQVPMQDPRGNMQRGPPVGGAPAPRGLLGDAPNDPRGGTLLSVTG
EVEPRGYIGPPHQGPPMHHVPSHDGRGPPDMRNAHEPRGMQHDMRAGPMGEQRGPIGEQR
GPMGEPRGPMGEPRGPMGDPRGMMGDPRGPMMDQRGPPHESRGSFDPRSIPTHDPRSGPQ
HDPRSQPPPAQQDPRGGSYPNTHQPNAPMGTRDPRGIDSRGIDTRGPGPGPGPGPGPNQG
PVSNPRGPMAGGLQVPGPGTHQIGNSGPQGSQQPVPPRQGPTHTVAGGQPGGFSPAQTQV
TPQDHEKAALIMQVLQLTPEQIAMLPPEQRQSILILKEQIQKSAGAP
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacttagtccgggacccggccattgatcgctccctgcgctcggtattcgtggga
aatattccatatgaagctacagaagaacaattgaaggatattttctctgaagttggtccg
gtgttgagtttcagacttgtgtatgacagagaaacaggtaaacccaaaggttatggcttc
tgtgagtaccaggatcaggagactgcgctcagtgccatgcgcaatctcaacgggagagaa
tttaatggaagagcattgcgtgtggacaatgctgcaagtgagaagaataaggaagagctc
aagaatcttggtacagcaggccctgtcatggagtctccttatggtgatccagtctctcca
gaagatgctccagagtccatcagtcgtgctgtagccagccttccgcctgagcaaatgttc
gaactcatgaaacaaatgaagctctgcattcagaacagtcctcaggaagctcggaacatg
cttcttcagaatcctcaactagcatatgcacttttgcaggcacaagtggtcatgagaatt
gtggatcctgaaattgccatgaaaatgttacatcgaccagccaatgtgacgccactgatt
tcatctggtcaacctacagcaggaccaagtgcagcttcagttcaagctgctcctccagtc
tcccagccacagccaatgagtgggatgcatgtgaatggggctcctatgatgcagcaatct
atgcaggctgcgacgtctgttcctgggccaggaccggtacaaggtccaggggggccagta
cctggaccgggacctggacccggacctggaccgggaccagttgggcctgcaggaaatatg
cagccgcagatgggtcttccgccctcaggacctgtgcccatggacagaggacaaggaaat
atgcactcacctgtggcctccgcagggactgcacagatcgagagaggacaagtcccaatg
caggaccccagaggcaacatgcagcggggtccaccagtaggtggggctccagctccgaga
ggtttattgggagatgcaccaaatgacccacgtggaggaactctgctttctgtcactggg
gaggtggaaccaagaggatatattggtcccccgcatcaaggcccacccatgcaccatgtg
cctagtcatgatggcagaggacctcctgacatgaggaatgcccatgagccacgaggaatg
caacatgacatgagagcagggccaatgggagaacagagaggacccattggtgaacagagg
ggcccaatgggtgagccacgtgggccaatgggagaaccaagaggaccaatgggagatcca
agagggatgatgggcgatccaagaggtccaatgatggaccagagaggacctcctcatgaa
tctagaggttcatttgatccccgcagtattccaactcatgatcctcgatctggacctcag
catgatcctcgctcccaacctcctcctgctcagcaagaccctcgtggagggtcttacccg
aacacgcatcaaccaaatgcacccatgggcactagagatcccagaggtattgattcaaga
ggtattgataccagaggaccagggcctgggccagggccaggaccaggtccaaaccaaggc
ccagtctcaaatccaagagggccaatggcaggaggactacaggttccaggtccaggcaca
catcaaatagggaacagtggcccacagggatcccagcaacctgttccaccccgacagggt
cctactcacacagtggctgggggtcaacctggaggattcagtcctgctcagactcaagtg
acaccacaggaccatgagaaggctgcgctgattatgcaggtactccaattgactccagaa
cagattgccatgctacctccggagcagagacagagtatccttattctgaaggaacagatt
cagaaatctgcaggagccccttga
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