Rhincodon typus (whale shark): 109924850
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Entry
109924850 CDS
T06055
Name
(RefSeq) protocadherin-9 isoform X2
KO
K16498
protocadherin delta 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
109924850
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rtp01009
]
109924850
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtp04515
]
109924850
Protein phosphatases and associated proteins [BR:
rtp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109924850
Cell adhesion molecules [BR:
rtp04515
]
Cadherins
Protocadherins
109924850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
DUF7420
Baculo_11_kDa
MAP17
Cadherin_4
DUF6377
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
109924850
NCBI-ProteinID:
XP_020388994
LinkDB
All DBs
Position
6:87672175..88092271
Genome browser
AA seq
1020 aa
AA seq
DB search
MDVRDFYLLFALVACLTVDCTLAQELVYTIQEELPENILIGSIPRDLNISAGGADLIYRL
VSKAGEVPLLRVSSGTGDIYTGSQRVDRERLCAGESGSSECSFEIEVVILPNDYFRLVKV
KLVVRDVNDNAPMFPSPVINISIPENTLPNSRFPIPSASDPDTGANGVQRYQLLDGQSVL
GLDVVESPEGEKWPQLIVQRGLDREQKDTYVMKIKVQDGGEPPKSSTAILQVTVSDVNDN
RPVFRESQLEVQLPEDSPLGTSVIQLHATDADVGSNAELRYLFSPQTPAAVRRYFALDPS
LGLITVQRPLDREDVSLHKMTVLATDGSSSPARATVTVNVTDVNDNPPGIDIRYIISPVN
GSVHLSEKDPVNTKIALITVSDRDTDVNGKVVCYIEKEVPFHLKAVYDNQYLLETSSFLD
YESTNQYSFRIVASDAGKPSLNQSALVRVKLEDENDNPPVFSQPVIELAVPENNHRGLYL
TTVSATDDDSGKNAEIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERYIFTVTARDSG
NPPLQSQAAVIVTVLDENDNNPKFTHNHFQFFVSENLPKYSTVGVITVTDLDAGANAEVM
ASVVGDNANFILDPLSGVIRSNVSFDREQQSSYTFEVKAVDRGRPVRTSIAKVTINVIDV
NDNSPVVIYPPSNSSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYSIVSGNNKGLFRI
DPVTGNITLEEKPTAADQGLHRLVVNISDLGYPKPLHTLVLVYLYVNDTVNNASYVYELI
RRTIETPLDKNIGDGTQPWQNEDYLTIMIAIVAGAMVVIVVIFVTILVRCRQSSRFKATQ
RNKQGAEWMSPNQECKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDPAHEPINGTITLPA
ELEEQTIGRFDWGSTPPTTFKPNSPDLARHYKSGSPQPSFHLKPDTPISAKKHHVIQELP
LDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQNSAQYSQKYEMETYYG
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgcgggatttctacctactcttcgctctggtcgcctgcctgacggtggactgt
accctggcgcaggagctggtctacaccatccaggaggagctgccggagaacatcctgatc
ggcagcatcccgcgggacctgaacatctcggccggcggcgccgacctcatctaccgcctg
gtgtccaaggcgggcgaggtgccgctgctgcgggtctccagcggtaccggggacatctac
acgggctcgcagcgggtcgaccgggagaggctgtgcgccggggagtcggggtcgagcgag
tgctcgttcgagatcgaggtggtgatcctgcccaacgactacttcaggctggtcaaggtg
aagttggtggtgcgggacgtgaacgacaacgcgcccatgttcccgtcgccggtcatcaac
atctccatcccggagaacacactgcccaacagccgcttccccatcccgtcggccagtgac
ccggacaccggggccaacggcgtgcagcgctatcagctgttagacgggcagagcgtcctg
ggcttggacgtggtggagagccccgagggtgagaagtggccgcagctcatcgtccaacgg
ggcttggaccgggagcagaaggatacctacgtgatgaagatcaaggtgcaggacggcggg
gagccccctaaatccagcaccgccatcctgcaggtcaccgtcagcgacgtgaacgacaac
cgcccggtgttccgggagagccagctcgaggtgcagttgcccgaggactcgcccctcggt
acctcggtcatccagctccacgccaccgacgccgacgtgggctccaacgccgagctccgc
tacctgttcagcccgcaaacccccgccgccgtccgccgctacttcgccctggacccgagc
ctcgggctcatcaccgtgcagcggccgctcgaccgggaggacgtctcgctgcacaagatg
accgtgctggcgaccgacggaagctccagccccgcccgagccaccgtcaccgtcaatgtc
accgatgtgaacgacaacccgcccggcattgacatccgctatatcatcagcccggtcaat
ggctctgtgcacctctcggagaaagacccggtcaacaccaaaatcgccctcatcaccgtc
tccgacagggacaccgatgtcaatggcaaggtggtgtgctacattgagaaggaggtgcct
ttccacctcaaagctgtgtatgacaaccagtacctcctggaaacctcctccttcctggac
tacgagagcaccaaccagtactccttcaggatagtggcatcagacgcaggcaaacccagc
ctcaaccagagtgccctggtgagggtgaagctggaggatgagaatgacaaccccccagtc
ttcagccagcccgtcatcgagctggcggtgcccgagaacaaccaccgcggcctctacctg
accaccgtcagtgccacggacgacgacagcggcaagaacgcagagatcgtctaccagctg
gggcccaacgcctcgtttttcgacctggaccgcaagacgggcgtcctgaccgcctcccgg
gtcttcgaccgggaggagcaggagcgttacattttcaccgtgactgccagggacagcggt
aaccctccgctgcagagtcaagcggccgtgatcgtcaccgtgctagacgagaacgacaat
aaccccaaattcacccacaaccacttccagttctttgtgtccgagaacctgccaaagtac
agcaccgtgggagtgattactgtcaccgacctggatgcaggggccaatgcagaggtgatg
gcttctgttgtgggtgacaacgcaaattttattctggacccactgagtggtgtgataagg
tccaacgtatcattcgacagagaacagcaaagctcctacacgttcgaagttaaagctgta
gacagggggagaccagtccgcacttccattgctaaagtcacgatcaatgtcatagatgtc
aacgataacagtcccgttgtaatctacccaccctccaactcttcattcaaactagtaccc
ctgtctgctatacctggttctgtggtggcagaagtgtttgctgtggacgttgatacaggt
atgaatgcagagctcaaatacagcattgtcagcggaaataacaagggtttgtttcgaatt
gaccctgtgactggtaatattaccttggaggagaaaccgactgccgcagaccagggcttg
caccgtctggtcgtgaacatcagcgatttaggttatccaaaacctttgcacacacttgtg
cttgtctacttgtatgtaaatgacacggtaaacaatgctagctatgtctatgagttaata
cggaggacaattgaaactccactagacaagaacattggagatggcacccagccctggcaa
aatgaggattaccttaccataatgatcgccatagtggcgggagccatggtagtgattgtg
gtcatctttgttacaatattggtgcggtgccggcagtcctcaaggttcaaggctacgcaa
aggaacaagcagggtgctgaatggatgtctcccaatcaggagtgcaagcagaacaaaaag
aagaaaaggaagaaaagaaaatctccaaagagttcccttctaaactttgtcaccattgag
gaatccaaacctgatgaccctgcccatgaacccatcaatggaaccattacccttccagct
gagctggaggagcaaacaatagggcgatttgactggggcagcacaccaccaactacattt
aagcccaacagcccagacctagcgaggcattacaaatctggctctccgcagccctctttt
catctgaagccagacacccctatttctgcgaaaaagcatcacgtgattcaggagctccct
ttggacaacaccttcgttgggggctgtgacaccctgtcgaagcgctcttccactagttca
gaccacttcagtgcctcagagtgtagctcccaaggaggcttcaagacaaagggcccattg
cacacccgacagaattccgcacagtattcccaaaagtatgagatggaaacttattatggt
taa
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