KEGG   Rhincodon typus (whale shark): 109925008
Entry
109925008         CDS       T06055                                 
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like isoform X2
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp03082  ATP-dependent chromatin remodeling
rtp03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    109925008
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    109925008
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rtp01009]
    109925008
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rtp03021]
    109925008
   03036 Chromosome and associated proteins [BR:rtp03036]
    109925008
Protein phosphatases and associated proteins [BR:rtp01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     109925008
Transcription machinery [BR:rtp03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     109925008
    SWI/SNF complex
     109925008
Chromosome and associated proteins [BR:rtp03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    109925008
   PBAF complex
    109925008
   SWI/SNF complex
    109925008
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd DUF1679
Other DBs
NCBI-GeneID: 109925008
NCBI-ProteinID: XP_020380576
LinkDB
Position
48:complement(2302595..2380178)
AA seq 339 aa
MFRGSLYKKYPSLWRRLATVEERKKIVASSHDHGYTTLATNVTLLRATEVEEILEGNDEK
YKAVSISTEPPTYLREPKSKRSNQWVPTLPNSSHHLDAVPCSTSINRNRMGRDKKRVFPL
CFDDHDPAVIHENAAQPELLVPIRLDMEIDGQKLRDTFTWNMNEKLISPEMFAEILCDDL
DLNPLNFVPAVASAIRQQVESYPMDSILEDQTDQRVIIKLNTHVGNILLVDQFEWDMSER
DNSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFSENPLPVVESALRNTTDA
DQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPSW
NT seq 1020 nt   +upstreamnt  +downstreamnt
atgttccggggctcgctgtacaaaaagtatccgtcactttggagacgtctggctactgtc
gaagagaggaagaagattgttgcttcgtcacatgatcatggctacacgactctggccact
aacgttaccctgctacgtgcaacagaggtggaagagatcctggaaggcaatgatgaaaag
tacaaggccgtctctatcagcactgagcctccaacgtaccttcgggaaccgaagtcgaag
cgaagtaatcaatgggtgcccaccctaccgaacagctcgcaccacctggacgcagtgccc
tgttcaacctccatcaacagaaaccgcatgggccgggacaagaagagggttttccccctg
tgtttcgatgaccacgatcccgcagttatccacgagaatgccgcccagcctgagctcctg
gtgcctatccggttggacatggagattgatggacaaaaactgcgagacaccttcacctgg
aacatgaacgagaagctgatatcgcccgagatgttcgctgagatcctgtgcgatgacctg
gatttgaacccgctgaactttgtaccggctgtggcctcggccattcggcagcaggtggaa
tcctaccccatggacagcatcctggaggaccagaccgaccagcgagtcatcatcaagctc
aacacacacgttgggaatatcctgctggtggaccagtttgaatgggacatgtcggagagg
gataattcgcccgagaagtttgcattgaagctgtgctcggagctgggcctgggcggagag
ttcgtcaccaccatcgcttacagcatccgtgggcagctgagctggcaccagagaacgtac
gcgttcagtgagaacccactgccagtcgtggagagtgccctccggaacaccacggatgct
gaccagtggtgccccctcctggaaacactgaccgacgccgagatggagaagaagattcgt
gaccaggacagaaacaccagacggatgcgacgccttgccaacactgctcccagctggtaa

DBGET integrated database retrieval system