Rhincodon typus (whale shark): 109925153
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Entry
109925153 CDS
T06055
Symbol
colgalt1b
Name
(RefSeq) procollagen galactosyltransferase 1
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp00310
Lysine degradation
rtp00514
Other types of O-glycan biosynthesis
rtp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
109925153 (colgalt1b)
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
109925153 (colgalt1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
rtp01003
]
109925153 (colgalt1b)
Enzymes [BR:
rtp01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
109925153 (colgalt1b)
Glycosyltransferases [BR:
rtp01003
]
O-Glycan biosynthesis
O-linked Gal type
109925153 (colgalt1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_25
Glyco_tranf_2_4
Anp1
Aminotran_4
Motif
Other DBs
NCBI-GeneID:
109925153
NCBI-ProteinID:
XP_048473979
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Position
38:16809344..16858490
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AA seq
620 aa
AA seq
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MVSLGLSPRVPRRFRPSRLLLAALLASLGSRGSGYFPEERWTEESRLLRPRVQISIIARN
SAHSLPAFLGRVERLSYPKDRLCLWVATDHNVDNTTAILREWLVNVQGLYHSVEWRPMDE
PKSYFDEMGPKHWSDSRYEHVMKLRQAALNAARDRWADYVLFIDADNFLINPDTLNLLIA
ENKTVVAPMLDSRSAYSNFWCGMTAEGYYKRTPAYVPVRKRDRLGCFPVVMVHSTMLIDL
RKEASKQLAFYPPHPDYTWSFDDIIVFAFSCRQAEVQMYICNKEQYGFLQVPLKSTSTMQ
DEVDSFIHVHLEVMVNHAPMEPSRYLSVSPKYPAKMGFDEIFLINLKRRPDRRMRMLDSL
YEQEIACKVIDAVDGRAFNSTQIKALGITMLPDYKDPYSGRPLTKGEMGCFLSHYNVWNE
IVERGLQTSVVFEDDLRFEIFFKRRLKYLMKEVEKAALDWDLIYIGRKRMQVDHPEKPVP
GVRNLVEADYSYWTLGYVLSLQGAQKLIDAKPFNKMLPVDEFLPVMYDKHPVSEYMDHFE
NRDLRAFSVEPLLIYPTHYTGDPGYVSDTETSTVWDNENLKTDWDRAKSQKTKEQAKIRE
AAQNLDVSHSPIDSASRDEL
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggtatctctcggtctttctccccgtgtcccccgccgctttcggccctctcggctgctg
ctggccgccctcctcgcttccctgggtagccggggctccggatatttcccggaggagcgt
tggaccgaggagtcccggctgctccggccccgggtccagatcagcatcatcgcccggaac
agcgcgcacagtctgcccgctttcctcggccgcgtcgagcggctctcgtaccccaaggac
aggctgtgtctgtgggtagcgacagaccacaatgtggataacaccacggcgatactaagg
gaatggctggtgaacgtacagggactgtaccattctgttgaatggagacctatggatgag
cccaaatcctactttgatgaaatggggcctaagcattggtctgactctcgctatgagcat
gtgatgaagctgaggcaagcagcactgaatgcagccagggatcgatgggctgattatgtt
ttgtttattgatgcagacaacttcctgatcaaccctgacaccttaaacctcctcatagca
gagaacaaaacagttgtggctcccatgttggactcgcgctctgcatattccaatttctgg
tgtggaatgactgccgagggttattacaaacggaccccggcctacgtgcccgtacggaaa
cgggaccggctgggctgcttcccagtcgtcatggtccactccacgatgctgatcgacctt
cgtaaagaggcctccaagcaactggcattttaccctccacacccagactacacgtggtca
ttcgacgacatcattgtctttgctttctcatgtcgacaagcagaggtgcagatgtatatc
tgtaataaagagcagtatgggttcctgcaggtgccactgaaatcgaccagcacaatgcag
gatgaggtggatagcttcattcacgtccatttggaggttatggtgaaccacgctcccatg
gagccttccagatacctgtctgtgtcaccaaagtatccggctaagatgggcttcgatgag
atttttctgatcaacttgaagcgccgcccagataggagaatgcgaatgcttgattctcta
tatgagcaggagattgcatgcaaagtgattgatgctgttgatggaagagccttcaacagc
acccagataaaggcccttggcatcaccatgctgccagattataaagacccttactcgggc
cgacccttgaccaagggggagatgggctgttttctcagtcactacaatgtctggaatgag
atagttgaacgaggattgcagacctctgtggtctttgaagatgatctacggttcgagatc
ttcttcaagcgaagactgaaatatttgatgaaggaagtggagaaggctgcactcgactgg
gatctgatctacattggccgaaagcggatgcaagtggatcacccggagaagccggtgcct
ggggtccggaatctggtggaggcagattactcctattggactctgggttacgtcctctcg
ctgcaaggggcacagaagctcatcgatgccaagccattcaacaagatgttacctgtggat
gaatttctgcctgtgatgtatgacaagcacccagtgtcagagtacatggatcactttgag
aaccgtgacctgagggctttctccgtggagccgctccttatctaccccacgcattacaca
ggtgacccaggctacgtgagcgacacggagacctccacggtctgggacaacgagaacctg
aagacggactgggaccgtgccaagtcgcagaagaccaaggagcaggcaaaaatccgggaa
gcggcacagaatctggacgtgtcacactctcccattgactcagcctctagagacgagctg
tga
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