Rhincodon typus (whale shark): 109925314
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Entry
109925314 CDS
T06055
Symbol
exosc4
Name
(RefSeq) exosome complex component RRP41
KO
K11600
exosome complex component RRP41
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109925314 (exosc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109925314 (exosc4)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
109925314 (exosc4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
109925314 (exosc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
109925314
NCBI-ProteinID:
XP_020380851
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All DBs
Position
2:complement(1824139..1829933)
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AA seq
217 aa
AA seq
DB search
MGVFAQADGSAYIEQGNTKALAVVYGPHEVRGARSKALHDKAMVNCQYSMATFSTGERKR
RPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDIYVQILQADGGNYCACVNAATLAVID
AGIPMRDYVCACSTGFIEDTPLVDLSYIEESAGGPQVALALLPKSQQIALLEMNSRLHED
HLEKVVDAAAKACGDVYAVLDRVVREHVQEVTTLVGE
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgttcgctcaggccgatggctcagcttatatcgagcaggggaataccaaggcg
ctggcagtggtttacggtccgcatgaggttcgtggtgctcgcagtaaagccctacatgac
aaagcaatggtgaactgccagtacagcatggcgaccttcagcacaggcgagcgtaagcgg
agaccccatggagaccgcaagtcgtcagagatgaccctgcacctgaaacagacattcgaa
gctgccattttgacacagctttacccgcgatcccaaattgatatttacgtgcagatcttg
caggcagatggtggcaactattgcgcctgtgtcaatgcggcgacactggctgtgatcgac
gcaggaatccccatgcgggactacgtgtgtgcctgctccacaggctttatcgaggacacc
cctttagtggacctcagctacatcgaagagtcggctgggggtccccaggtggccctggcc
ctgctccccaagtcgcagcagattgctttgctggaaatgaactcgcggctgcatgaggac
cacctggagaaagtggtggacgcagcagcaaaagcatgtggtgacgtgtatgctgttttg
gaccgtgtggtcagggagcatgtgcaggaagtgaccacgctggtgggggagtga
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