Rhincodon typus (whale shark): 109925732
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Entry
109925732 CDS
T06055
Symbol
si:ch73-233f7.1
Name
(RefSeq) protocadherin-10
KO
K16499
protocadherin delta 2
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtp04515
]
109925732 (si:ch73-233f7.1)
Cell adhesion molecules [BR:
rtp04515
]
Cadherins
Protocadherins
109925732 (si:ch73-233f7.1)
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Bact_surface_Ig-like
Motif
Other DBs
NCBI-GeneID:
109925732
NCBI-ProteinID:
XP_048459453
LinkDB
All DBs
Position
12:66781402..66783936
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AA seq
844 aa
AA seq
DB search
MASTWLKWQVITCIISSCVWDRVAGQIRYSIPEELKHGAFVGNIADDLGLNVRELSARRF
RIVPGANTQFLEVNLENGVLFVNEKMDREQLCDLSTSCFLHLEIVIENPLELYRVEVEIL
DVNDNSPGFPWREFRLEIAESVAVGARFPLESAHDPDVGTNSLQTYRLSPNPYFSLEVQT
RSERRKFPVLVLDMPLDRENQALHQLVLTALDGGFPERSGTALLTVVVLDVNDNAPVFDQ
AVYTVCLVENAPINTLVIKLNATDLDQGSNGEVTYSFSHHAPARLRQLFRVEPQTGEIRV
QGVVDYEEASVYEIYIQAKDNGPHTAAVHCTVVVEVIDVNDNAPEVTLTSVSSPVREDAL
PGTVIALISVSDRDSGANGKTSCHIPAQVPFKLQSSFTNYYTLVTSERLDRESVLEYNVS
LTVTDSGSPPLSTVKTIPVKVSDVNDNAPRFAHPSYTVYLMENNAPGASICSVSALDPDL
EQNAYVSYCILNSKVRGTPISTYVSINLNTGNLYALRSFDYEQLKKFQVFVQAWDAGFPS
LHNNVTVNVIILDQNDNAPAIVSPLPLNGSAEMVPRSADPGYPVVKVTAVDADSGQNSRL
SYQLYRATEPGLFSIGPFTGEIRTSRRFEEHDSHKHRLVVHVTDHGKPPLSSSVTINVFI
VDSLPENFSDLTEGPQGIEHFSEFNLYLIVCLGSISFVFLVAIIALISIKCHRRSRHGTL
GRRCSLSACCCCRSGPSRCCLRRKPSRAVLNNSHTNFQLPPSVKGPPSCMEVGGSRSLSQ
TYCYKVCLSPESAKTDLMFLKPYISPPPAAGSNSKPANPYVSAWRRQISGGANVATNGSS
EVST
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtacctggttaaaatggcaagtgatcacctgcattatatcgagctgtgtttgg
gatcgggtggccggccagattcggtactcgattcccgaagaactgaagcacggggcgttc
gttgggaatatcgccgacgatttgggattgaatgtgagagaactgtctgctcgcaggttc
cgcatcgtgcccggtgccaacacgcagttcctggaggtgaacctagagaatggagtcctc
ttcgtgaatgagaagatggacagggagcagctgtgtgatctgagcaccagctgcttcctg
catttggagattgtgattgaaaacccactggagctgtaccgagtggaagtggagatcctg
gatgtgaatgacaattctcccgggttcccgtggagggagttccgtttggaaatcgccgag
tcggtggctgtcggggcgcgtttcccgctggagagcgcgcacgatcccgatgtaggcacc
aattctctccaaacctaccggctcagccctaacccgtacttcagcctggaggtgcagacc
cgcagcgagcgcaggaaattcccggtactggtgctggacatgcctctggaccgggagaac
caagctctccaccagttggtgctgactgccctggacggtggattcccagagagatccggt
accgctctgctcaccgtggtcgtccttgatgttaacgacaacgcgccggtctttgaccag
gctgtgtacacggtctgcctggtggagaacgctccgataaatacgttggtgattaaactt
aacgccaccgatttggaccaaggctcaaatggagaggtgacttattcctttagtcaccat
gcgccagcgagattgcgccaactattccgggtagagccccaaaccggcgaaattcgggtc
caaggggtggtggattatgaagaggcgagcgtttatgagatttatatccaggccaaggat
aacggtccccacacagcggctgtgcattgcactgttgtggtggaggttattgatgtcaat
gacaatgcccccgaggtcaccctcacttctgtgtccagcccggtccgggaggacgcttta
ccggggactgtcatcgccctgatcagcgtcagcgaccgggattctggcgctaacgggaaa
accagctgccacatcccggctcaggtccccttcaaactccaatcctctttcacgaactat
tacactctggtcaccagcgagaggctggaccgtgaaagcgtgctggagtataacgtgagt
ttaacagtcaccgactccggctcccctcccctttccaccgtcaaaaccatcccggtgaag
gtttccgatgtgaacgacaacgcgccccgttttgcacatccttcctacacggtttacctg
atggagaataacgcgccgggcgcttctatctgctcagtgtctgccctggacccagacctt
gagcagaacgcctatgtgtcctattgcatcttaaacagcaaagtcaggggcacccccatc
tccacgtatgtctccatcaacctgaacacgggcaatctgtacgcactgcgttcctttgac
tacgagcaactgaagaagtttcaggtgtttgttcaagcttgggacgccggcttcccgtct
cttcacaacaacgtgacggtgaacgtgatcatcctggaccagaacgacaatgcgccggcc
atcgtatccccgctgcccctgaacggatcggctgagatggtgccccgttccgccgatccc
ggttacccggtggtcaaggtgacggcggtggacgccgattcgggccagaactcgcggctc
tcttaccagctataccgagccaccgaacccggtctgttcagcatcggcccgttcaccggg
gaaatccgcacgagccgccgctttgaagagcacgactcccacaagcacaggctggtggtt
catgttacagaccacgggaagccaccgctttccagctcggtcactattaatgtcttcatc
gttgacagtctgccggagaacttctcagatttgaccgagggaccccagggcatcgaacac
ttctcggagttcaacctttatttaatcgtctgtctgggctccatctccttcgtgttcctg
gtggccattatcgccttgatctctattaagtgtcacagaaggagcagacacgggaccctg
ggcaggcgctgctctctgagcgcctgttgttgctgccgttccgggccatcccgctgctgt
ctccggagaaagccctcccgggccgttctcaacaactctcacaccaacttccaactgcct
cctagtgtcaaagggccgcccagctgtatggaggtaggcggcagccgttctctttcccaa
acctattgctacaaagtgtgtttgagtcccgaatcggctaagaccgacttaatgttcctc
aaaccgtacatttcaccacctcccgccgcgggtagtaactcgaaacctgctaacccctac
gtgagtgcgtggaggaggcaaatctcaggtggggcaaacgtagcaacaaatggatctagc
gaggtgagtacctag
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