Rhincodon typus (whale shark): 109926203
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Entry
109926203 CDS
T06055
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03022
Basal transcription factors
rtp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109926203 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
109926203 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109926203 (ercc2)
03036 Chromosome and associated proteins [BR:
rtp03036
]
109926203 (ercc2)
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109926203 (ercc2)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109926203 (ercc2)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109926203 (ercc2)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
109926203 (ercc2)
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109926203 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
ISPD_C
AAA_11
SNF2-rel_dom
DUF7088
Motif
Other DBs
NCBI-GeneID:
109926203
NCBI-ProteinID:
XP_048474147
LinkDB
All DBs
Position
39:complement(238694..270168)
Genome browser
AA seq
684 aa
AA seq
DB search
MRLNIDGLLVHFPYDFIYPEQYSYMLELKRILDAKGHGVLEMPSGTGKTVSLLSLIVAYQ
MMYPTEVTKLIYCSRTVPEIEKVIEELRKLLNYYEKQSGEKIQFLALALSSRKNLCIHPE
VSSQRFGKEVDGKCRSLTASHIRMQHSSNPAVPICQFYEEFDLHGKQVPLTSGIYNLDDL
KVYGKQKGWCPYFLARYSILHANIIVYSYHYLLDPKIADLVSKELSRKSVVVFDEAHNID
NVCIDSMSVNITRRMLDQCQNNIETIQKTIQHIKETDAAKLKEEYRQLVEGLKEAHIARE
TDVYLANPVLPDEILQESVPGNIRTAEHFVGFMKRFVEYLKSRLRVHHVVAENPPSFLKD
VFDKVCIERKPLRFCSERLRSLLQTLEIADLSNFSPIILVSNFATLVSTYAKGFTIIMEP
FDDKTPTIINPVLHFSCMDPSIAIKPVFERFQSVIITSGTLSPLDMYPKILDFRPVIMAT
FTMTLSRTCLCPLIVGRGNDQVTISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVSFFT
SYHYMENIVASWYEQGILENIQRNKLIFIETQDAAETSVALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYTRDQFQIRENDFLTFDAMRHA
AQCVGRVIRGKTDYGLMIFADKVI
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgagattgaatattgatggattgttggtgcatttcccttacgatttcatctaccctgag
cagtattcctacatgttggagctgaagaggattcttgatgctaagggacatggggtcttg
gaaatgccatcgggcacggggaagactgtgtcactgctttcactgattgtggcctatcag
atgatgtatccaacagaagtgactaagctgatctactgctcccgaacagttcctgagatc
gagaaggtcattgaggagcttcggaagctgctcaattattacgagaaacagtctggcgag
aagatccagttcttggctctggctctgagctccaggaagaatctctgcatccacccagag
gtcagttctcagaggtttggaaaggaggttgatggcaaatgtcgcagcctgactgcatca
cacatcagaatgcagcactccagcaatcctgctgtgcccatctgccagttctatgaggag
tttgatctccatgggaaacaagtgccgctaacttctggaatttataacctggatgacttg
aaagtttatgggaagcagaagggatggtgtccatatttcttggccagatattctattctg
catgcgaacatcattgtgtacagttatcactacctactggaccccaagattgcagacctg
gtctccaaggagctgtcacggaaatctgtggtggtatttgatgaggctcacaatattgac
aatgtatgcattgactcaatgagtgtgaacattacccgacgtatgttagaccaatgtcag
aacaacattgaaacaatacaaaagaccatccaacatataaaggaaacagatgctgccaaa
ctgaaagaagaatacagacagttggtggagggactgaaagaagctcacattgccagagaa
acagatgtctatttagccaatcctgtattgccagacgaaattctacaagagtctgttcct
ggtaatattcgcacagctgaacattttgttgggtttatgaagcgatttgtggagtatctg
aagtcccgcctccgagtacaccatgtggtagctgagaacccaccctctttcttgaaggac
gtctttgataaagtctgcattgaacgcaaacctctcaggttctgctcagagaggttgcgg
tctttgctgcagacactggaaattgccgatctcagcaacttttcacctattatacttgtc
tcgaactttgctacattggtcagcacttacgccaaaggtttcaccatcatcatggaacct
tttgatgacaaaactccaacgattattaatccagtacttcacttcagctgcatggaccca
tccattgccatcaagcctgtgtttgagcgattccaatctgtgattatcacctcagggacc
ttgtctccactcgacatgtacccaaagatcctcgatttcagacccgttatcatggcaacg
tttactatgaccttgtcaagaacctgcctttgtccactgattgtgggacgaggcaatgac
caggtgacgatcagctccaagtttgaaacgagagaggatatcgctgtgatccgtaactat
ggtaacctgttgctggagatgtcagccgttgtcccagatggaattgtgtctttcttcact
agttaccattacatggagaacatcgtagcctcctggtatgagcagggaattctagaaaat
attcaacgtaacaaacttatatttattgaaactcaggatgctgcagagaccagtgtggcc
ctggagaaataccaggaggcatgtgagaatggacgaggggccatcctactgtcggtcgcc
agaggaaaggtctccgaggggatagattttgtccatcattatgggagagcagtcattatg
tttggtgttccctatgtctatactcagagcaggattctgaaggcccgcttagaatatacc
cgggatcagttccaaatccgggagaatgatttcctgacgtttgatgccatgaggcacgct
gctcaatgtgtaggaagagtcattcgaggaaaaactgattacgggctcatgatttttgca
gacaaggtaatttga
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integrated database retrieval system
