Rhincodon typus (whale shark): 109926839
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Entry
109926839 CDS
T06055
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109926839
03036 Chromosome and associated proteins [BR:
rtp03036
]
109926839
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
109926839
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
109926839
SLIK complex
109926839
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
Helicase_C
HDA2-3
ResIII
CHDCT2
Motif
Other DBs
NCBI-GeneID:
109926839
NCBI-ProteinID:
XP_048449663
LinkDB
All DBs
Position
3:79505175..79754662
Genome browser
AA seq
1076 aa
AA seq
DB search
MDTEELGERQQSSKPKDQGTDRQKHHFQYEGAMQQEAKENLNENYFLRDLSWKCVNIQSK
NEIRTLSQRQYNEAFEIDQFQIERKQLRNSCDSAPGFLKVKNVELVYAYSIEKKRNNSVI
LADEMGLGKTIQTISFLSYVFHEHQLYGPFLLVVPLSTLTSWQREIEMWAPEMNVVVYLG
DISSRNMIRTYEWMHPQTKRLKFNILLTTYEILLKDKSFLGGVNWAFIGVDEAHRLKNDD
SLLYKTMIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEVFEEEHGKGREVGY
TSLHRELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAVQKQYYKWILTRNYKALSKGCKG
STSGFLNIMMELKKCCNHCYLIKLPEDNNFYNRQEALQHLIRNSGKLILLDKLLCRLKER
GHRVLIFSQMVRMLDILAEYLKCRQFCFQRLDGSIKGELRKQALDHFNAEGSDDFCFLLS
TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII
ERAKKKMVLDHLVIQRMDTTGKTVLHTGSNPTNSTPFNKEELAAILKFGAEELFKEPEGE
EQEPQEMDIDEILCRAETRENEPGPTTVGEELLSQFKVANFSTMDDDLEPQRNTKDWDDI
IPEAQRRRMEEEERQKELEEIYLLPRMRNCAKQISFNGSEGRRRRRRSSESDSDSVSEGK
RPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLEAIARDAELVDKSEVDLRR
LGEMVHNGCIKALRESTGQEKTAARRGKVKGPTFRISGVQVNAKLVIAHEEELAPLHKSI
PPDPEDRKKYTIPCHTKAAHFDVEWNKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKI
LPDDPDKKPQAKQLQTRADYLIKLLSKDLARKEAQRLAEANSKKRKPRNKRSKAVKIVKV
EEIQSDSSAPSPSVKSSDEEGEIKDDSAGTKSTRKKLRPEKENEEKLEQETITKKEVEEK
DIKKEPKETRKDKKEKEEKKETKDKDIKKEIKDKEDKDKELIYKDREVKEEKVKLC
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atggacactgaggagctgggagagcgacagcagtcttccaagccaaaagatcagggcact
gaccgacagaaacatcactttcaatatgagggagcaatgcaacaagaagccaaagaaaac
ttaaatgaaaactacttcttaagagatctgagctggaaatgtgttaatattcagtctaag
aatgaaattagaacgttaagtcaaagacaatacaatgaagcttttgagatcgaccaattt
cagattgagcgcaagcaattacggaattcttgcgattccgcgcccggatttctaaaagtt
aaaaatgttgagctggtctatgcgtattctatcgaaaagaaaaggaacaatagtgttatc
cttgctgatgaaatgggtcttgggaaaaccattcaaaccatctcctttctcagctatgtg
ttccacgagcaccagctgtatggtccattcctattagtagttccgctgtcaacactcact
tcctggcaacgagaaattgagatgtgggcacctgaaatgaacgtcgtagtttacttgggg
gacatcagtagccgtaatatgataagaacatatgaatggatgcatcctcagacaaagcgg
ttgaaattcaatatattgttaacaacatacgaaattttgctgaaggacaagtcattcctc
ggaggtgtaaactgggctttcattggagtagatgaagcccatcgtctgaagaatgatgac
tctctcctgtataaaaccatgatcgacttcaagtcaaatcacaggctgctcataaccgga
actccactccaaaactcactcaaagaactctggtccctccttcacttcatcatgccagaa
aaattttcttcctgggaagtgtttgaagaggaacatggtaaaggaagagaagttggatac
acaagccttcatcgggaactggagccattcttgctgcgaagagtgaaaaaggacgttgag
aagtctctacctgctaaagttgaacaaatcttgcgagtggagatgagtgcagtccaaaag
caatactataaatggattttaaccaggaattacaaagccctgagcaaagggtgtaaaggc
agcacttctggctttctcaatatcatgatggaacttaaaaaatgttgtaaccattgctac
ctcataaaacttccagaagataataatttctataacagacaggaggccttacagcatttg
attcgtaatagcgggaagttgatactgttggacaagctgctttgtcgactaaaggagcga
ggccacagagttcttatcttctcccaaatggttcgaatgctggacattttagcagaatat
ttgaaatgccgacagttttgtttccagcgactagatggatctattaagggcgagttaagg
aagcaagcattggaccatttcaatgcagaaggatcagatgatttctgctttctgctatca
accagagcgggagggttaggtataaacctggcatctgcagacactgtagttatttttgat
tcggactggaatccgcagaatgatttacaggcacaagcaagagctcacagaattggtcag
aaaaagcaggttaatatatatcggctagttacaaagggaacagtggaagaagagatcatt
gaaagagcaaagaaaaagatggtgctggatcaccttgttatacaacgaatggatacaacc
gggaaaactgtgctacacactggctccaatcccacaaattctacaccttttaataaagaa
gagctggcagctatcctgaagtttggagctgaggaactttttaaagagccagaaggagag
gaacaagaaccacaggaaatggatattgatgaaattctttgccgtgctgaaactcgtgaa
aatgaacctgggcctaccactgttggtgaagagttgctatcccaattcaaggtggcaaat
ttctccacaatggatgatgaccttgaacctcagcgcaataccaaggactgggatgacatt
attccagaagcacaacggagaaggatggaagaggaagaacgacagaaggaacttgaggag
atctacttgcttcctcgaatgcgtaactgtgccaaacagattagttttaatggaagtgaa
ggaaggcgaagacggaggcgttcttcagagtcagatagtgactccgtttctgaagggaaa
cgtccgaaaaaacgtgggagacctcgaacaattccgcgtgaaaatattaaaggttttagt
gatgctgaaattcgaagatttatcaagagctacaagaagtttggcggacctctggaaagg
ttagaagcaattgcacgagatgctgaattggtagataagtcagaagtagatctcaggcgg
ttaggagagatggtgcataatggctgtattaaagctctacgagagtccacaggccaggag
aaaacagctgcaaggcgtggtaaagtaaaggggccaacgttccgaatctcaggtgttcag
gtgaacgctaagctagtcattgctcatgaagaggaactggcacccttacacaaatctatt
ccacccgatccagaggacaggaagaagtacactatcccatgtcatactaaagcagctcac
tttgatgtggaatggaacaaggaagatgactccaatcttttaataggcatctatgaatat
ggctatggtagctgggaaatgattaaaatggatcctgatctcagtttaacacacaagatt
ttacctgatgacccagataagaaacctcaggccaaacaattgcagaccagagctgactac
ctcatcaaattacttagtaaagacctggccagaaaggaggcacaaaggcttgctgaggct
aattcaaaaaaaaggaaaccaaggaataaaaggagtaaagctgtaaaaattgtgaaggta
gaagagattcaaagtgattcatcagcaccgtcaccttcagtcaaaagttcagatgaagaa
ggagagatcaaggatgatagtgcgggaacaaagtctacaagaaagaaattgagaccagaa
aaagaaaatgaagagaaattagaacaagaaaccataaccaagaaagaagttgaagagaag
gacatcaagaaagagccaaaagaaacaagaaaagacaaaaaagaaaaggaggaaaagaaa
gaaacaaaagataaagatatcaagaaagaaattaaagacaaggaggataaggataaagaa
cttatttataaagatagagaagtaaaagaagagaaggtaaaattatgttaa
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