Rhincodon typus (whale shark): 109927083
Help
Entry
109927083 CDS
T06055
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109927083 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtp03021
]
109927083 (taf5l)
03036 Chromosome and associated proteins [BR:
rtp03036
]
109927083 (taf5l)
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109927083 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
109927083 (taf5l)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
109927083 (taf5l)
STAGA complex
109927083 (taf5l)
TFTC complex
109927083 (taf5l)
SAGA complex
109927083 (taf5l)
SLIK complex
109927083 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
TFIID_NTD2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_Vps41
PEP5_VPS11_N
PROPPIN
WD_LRWD1
Beta-prop_DCAF12
DUF7165
Mala_s_1-like
Motif
Other DBs
NCBI-GeneID:
109927083
NCBI-ProteinID:
XP_020382573
LinkDB
All DBs
Position
9:complement(14736079..14764328)
Genome browser
AA seq
589 aa
AA seq
DB search
MTMKRVRTEQIQTAVALYLRRRQYVDSDGALKQGPKFSQTAEEMATNLTVQAESGSPNVV
SAAPCQADPNQYEIQFARLKIFLFDTESKYSQEVKQLLYPLFVYLHLDMVHSGLKSAADS
FYSRFHGMFLQNTDQKDIMEQLRTTLNSQDIYSNSKLRSLTENKYVLSLTEESYNYLLRY
LQSDNNSALCKVLASRVQLDVQCSPQTGYQLYNTGTISRTEGVGLEPSELPSTMLQNEAA
LEMLQDSIKRVKDGPPSLTTICFYAFYNTDQLLNTAEISPNSKLLSAGFDNSCIKLWSLR
AKKLKYGPQQVDVSRINLACDILDDEVEDDVGSEMKILRGHCGPVYGTKFLSDNSGLLSC
SEDTTVRYWDLCSFKNTGLYQGHAYPIWDIDISPLSLYFVTGSHDRTARLWALDRTYPLR
IYAGHLADVDCVKFHPNSNYIATGSIDKTVRLWSTQQGNTVRLFTGHRGPVLALAFSPNG
KYLASAGEDQRLKLWDLASGTLFKELRGHTDNITNLAFSPDSSLIVSASVDNSVRVWDIR
NTYSNSLVDGSSSELVGVYMGQTSNLLSVQFMACNLVLVTGVAQEKKEQ
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgaagcgtgtacgtacagaacagattcagacagcagtggctctctacctccga
agaagacaatatgttgactctgatggagccctgaagcaaggacccaagttttctcaaact
gcagaagaaatggcaactaacttaacagttcaggcagagtctggttctcccaatgtggtg
tctgcagcgccctgtcaagctgatcctaatcaatatgaaatacagtttgcacggctgaaa
atcttcctttttgatactgaatcaaagtacagccaagaagtgaaacaattgctctaccct
ttatttgtctacctccaccttgatatggtgcacagtggtttgaagagtgcagccgacagt
ttctacagtcgctttcatgggatgttcttacaaaatacggatcagaaggacatcatggaa
cagctacggactactctgaatagccaggacatttattcaaactccaagctgcggagcctg
actgaaaacaaatatgttcttagccttactgaagaaagttacaattatctcctccgctac
ctccagagtgacaacaatagtgctttgtgcaaggttctagcctctcgtgttcagctggat
gtgcaatgttctccacagacaggctatcagctgtacaacactgggacaatatctcgcact
gagggggtgggtttggagccctccgagctaccctctaccatgttgcagaatgaagctgca
ctggaaatgttgcaggatagtataaaacgggtaaaagatggacctccctctctcacaacc
atttgtttctatgctttctacaacacggaccagctgctcaatactgcagaaatttcgcca
aacagcaaattgctcagtgctggctttgataactcttgtatcaaactctggagcttgagg
gcgaagaaactcaaatatgggccgcaacaggtcgatgtctctcggatcaaccttgcctgt
gacatcctggatgatgaggtagaagatgatgtgggcagtgaaatgaaaatcctaagagga
cattgtgggccggtgtatggcaccaaattcctctctgataattcgggacttctgtcttgt
tcagaagacacaacagtccgttactgggatttgtgcagtttcaagaacactggtttgtat
caaggacatgcttatcccatctgggacatcgatattagtcccttgagcctttactttgtg
actgggtcacatgatcgaacagcaagactttgggcacttgacagaacataccctctacgc
atttacgcgggccacctagcagatgtagactgtgttaagttccacccaaattctaattac
atagctacaggctcaatagataaaactgtgcggctctggagtacacagcaagggaatact
gtccgcctcttcacaggacatcggggacctgtgttagcattagctttctctcctaatgga
aagtacttggcttcagcgggtgaagatcagcgattaaagttatgggaccttgcgtcgggt
actttattcaaagaactgagagggcatactgacaatataactaatcttgcatttagtccc
gacagcagtttgatagtttctgcatctgtggataattcagtccgtgtatgggatattcgt
aacacttattctaattcactggtggatggttcctccagtgagctggtgggtgtatacatg
ggacagaccagtaaccttttgagcgtgcagttcatggcatgcaatctggtattggttact
ggtgttgcacaagagaaaaaggaacaataa
DBGET
integrated database retrieval system
