Rhincodon typus (whale shark): 109927167
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Entry
109927167 CDS
T06055
Symbol
lamb3
Name
(RefSeq) laminin subunit beta-3
KO
K06244
laminin, beta 3
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04382
Cornified envelope formation
rtp04510
Focal adhesion
rtp04512
ECM-receptor interaction
rtp04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109927167 (lamb3)
04518 Integrin signaling
109927167 (lamb3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109927167 (lamb3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
109927167 (lamb3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_N
EGF_laminin
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
CCDC18_2nd
Tropomyosin
CCDC39
DUF7121
Snapin_Pallidin
DUF8567
Rod_CreS
WIT1_2_N
BNR
MCPsignal
Zw10_N
MscS_porin
LEKR1
Motif
Other DBs
NCBI-GeneID:
109927167
NCBI-ProteinID:
XP_048468027
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All DBs
Position
25:16555488..16595425
Genome browser
AA seq
1118 aa
AA seq
DB search
MLPLFLSLAFSSYVMAQTDCSQRACYPTPRDLVTGRADRLQASSTCGLHASERYCSPRMY
YGRELLQCCICDSRNEYNPVYSTNSHRIQNVASSGALRSWWQSENDQEQVSIQLDMDGKF
QLNNILLRFKSPRPAAMMIERSTDFGQTWKPYQYFADDCAASFPQIQTGQPQSFDDVRCQ
EQTRNQDSSDEQVTFNPLKSADYISGSKSNKINNMMPFTNLRINLIKPHKPVLSQELSNA
NTFYAVYDMKVQGSCFCNGHASSCTSGDNSVYTPRGPRKMIQEQCVCKHNTAGKNCEVCA
SFYNDRPWKPADDYNTNPCKKCNCNNHSQKCRFDPEVYRASGRVSGGVCVDCQHNTMGNN
CEKCKPSFYRNPQRDITAIDACVQCTCNGLGSQLDGSCNPTTGQCNCLPNVVGPNCDRCA
EGFWNLRRGIGCEPCRCDSRNSYSQRCDEVTGQCPCKTANSGRTCARANLQECPDNYYSW
GTECVRCNCDQRGTEASGCDKSTGQCLCRAGVTGILCNQCKQLRGYCSDFPNCNQCHPCF
QIVDSQISTLNIRHKALVNTKLPAQGGNDYDSEIRDLDNKLQQVQAIISNPAVTDNTITD
VYNNYNQLRTEADQMNLDTNIVDQSYHLRTEMNVLDNNIKNINSQIQSTQEKIDIFISEG
SQGNQGTFNNIRSSYLRSGKARDRVVGVEPTILKSREARLTANQLTKHVNTDNRNKLEKL
KDGLKFPNINPLINKVCGGGMGEACTPEKCHGDLCPATCEGINCQGTRHLAEKAIEDAER
GSSSLPDISNRISQLAKRLENTDQKAQQMKSHTLRLTNQVVSAKDQMHKNIEDIKTLINT
IKDFLTSAQADPDEIQRISEHVLSLKLPTDAVTIQDKITSLRNIVSRIPDVSEILANTQD
DVAKAKMLLEDANKARERASRVKDNINEVQDVLTDANEALKDVSDIIEDATEDIDTAQEK
ITKIEHKLTHTETNLQDITERLRDLTNNINNLQNQNNINRQKATDLEIRALDSRNMGDKA
EQDFKQLVSLYEKLQNNIPQSLPKDMIDRVNRVRSEADYYFKEVQQRLQEIAAIEQNLAE
GNKQLAMKFAQLEDYQDQVTKIKKYIETRAQYYDQCTP
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgttgccactattcctaagtctagcatttagcagttatgtaatggcacagacagactgc
tctcaacgggcatgttaccccacaccaagagacctagtcactggtcgagcagatagacta
caagcatcatctacatgtggccttcatgcatctgagagatactgcagcccaagaatgtac
tatggacgggagttgctgcagtgttgcatctgtgactcaagaaatgaatacaatcctgtc
tattccacaaacagtcatcgaattcagaatgtggcttcttcaggtgcattgaggagctgg
tggcaatcagaaaatgatcaggaacaagtgtctatacagttagacatggatggaaaattc
cagcttaacaatattcttctacgattcaagtctccacggccagcagccatgatgattgag
cgttccacagattttggtcaaacttggaaaccttaccagtactttgcagatgactgtgct
gcctccttccctcaaatacaaacagggcagcctcagagctttgatgatgtgcgctgtcaa
gaacagacaaggaatcaagattcatcagatgagcaggttacttttaaccccctcaaatcg
gctgattatatcagtggttcaaagagtaacaagattaacaacatgatgccatttacaaac
ctgaggattaatctaatcaaaccgcacaagccagttttatcccaagagcttagtaacgcc
aacaccttttatgctgtatatgatatgaaggttcaaggcagctgtttctgtaacggacat
gcatctagttgcacctcaggagataactctgtgtatactccccgtgggccaagaaaaatg
attcaagaacaatgtgtctgtaagcacaatactgcaggtaaaaactgtgaggtatgtgca
agtttctacaatgaccgaccgtggaaaccagctgatgactacaatactaatccatgtaaa
aaatgcaactgtaacaatcactcacagaagtgtcgctttgatcccgaggtgtacagagcc
agtggaagagtcagtggtggagtctgtgtggactgccaacacaatacaatgggaaacaac
tgtgaaaaatgcaaaccctctttctatcgcaacccacaacgagatattacagcaattgat
gcctgtgttcaatgcacgtgcaatggactgggatcgcaacttgatggcagctgtaatccc
accacaggccaatgtaattgtctaccaaatgtggtaggtccaaactgtgaccggtgcgct
gagggcttctggaacttgcgaagaggaattggctgtgagccatgtaggtgtgattccaga
aactcttacagccaacgctgtgacgaggttacaggtcagtgtccgtgtaagacagcaaat
agtggaagaacatgtgcaagagcaaatttgcaagaatgcccagacaactattacagttgg
ggtacggaatgtgtacgatgcaattgtgaccaaagaggtaccgaggctagcggatgtgac
aagagtacaggacaatgcctgtgccgtgcaggtgtcacagggatattgtgtaaccagtgc
aagcagcttcgtggttattgctctgactttccaaactgcaaccagtgtcacccatgtttc
cagattgtggatagtcaaataagcacactgaacattcgacacaaagccctggtaaacaca
aagctgccagctcaagggggaaatgattatgattctgagatacgtgaccttgataacaaa
ctgcaacaagttcaagcaataattagcaacccagctgtgacagacaacacgatcaccgac
gtgtacaacaactacaatcagctcaggacagaagctgaccagatgaatcttgacaccaat
attgtggatcaaagttatcatttacgcacggaaatgaatgttttggacaataatataaaa
aacatcaacagtcaaatacagagcacacaagaaaaaattgacattttcatcagtgaaggc
tcacaaggcaaccaaggtacattcaacaacattcgttcatcatatctacggtctggaaaa
gcaagagacagggttgttggtgtggaacctaccattcttaaatctagagaagcacggcta
actgcaaaccaacttactaaacatgtaaacacagacaacagaaataagctggagaagctg
aaagatggtctgaagtttcccaatataaatcctctcatcaacaaagtctgtggcggtggt
atgggggaggcttgcactccagaaaagtgccatggtgacctctgtcctgcaacttgcgaa
ggtatcaactgccagggaacacgtcatctggctgagaaagctattgaagatgccgagaga
ggaagtagttccctacctgatatctccaacagaatctcacaacttgccaaaaggcttgaa
aataccgaccaaaaagcacaacaaatgaaaagccacactctgcgtttgacaaatcaagtt
gtctcagccaaagatcaaatgcacaagaacattgaagacatcaagactctcatcaacaca
atcaaagatttcctgacatcagcccaggcagatccagatgaaattcagagaattagtgaa
catgttctctccctcaaacttcccactgatgctgtgacaatccaagataagatcaccagt
ttacgcaatattgtctctaggattcctgatgtcagcgaaatattagcaaacacacaggat
gatgttgccaaggctaaaatgcttcttgaagatgcaaacaaagccagagagcgagctagc
agggtgaaggataatatcaacgaagtacaggatgttctgactgatgccaatgaagccctg
aaggatgtgagtgacattattgaagatgccacagaggatattgacacagcccaggaaaaa
attacaaagattgagcacaagcttacccacacagaaactaatttgcaggatataacagaa
cgtctaagggatctcactaataacattaacaacttgcagaaccaaaacaatattaaccgg
cagaaggccacagatttagaaatcagagctctcgattcacgaaacatgggagacaaagct
gaacaggatttcaaacaactcgtttccctgtacgaaaaattacaaaataatattccgcaa
tcacttccaaaggacatgatagatcgagtaaatcgggttagatctgaggccgattattat
tttaaagaggttcaacagaggttgcaggaaattgcagcaattgagcaaaatcttgcagaa
ggaaataaacagctggcaatgaaatttgctcaactggaggattatcaggatcaagtgact
aagatcaagaaatacattgaaactcgagctcaatactatgaccagtgcacaccataa
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