Rhincodon typus (whale shark): 109927411
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Entry
109927411 CDS
T06055
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04010
MAPK signaling pathway
rtp04020
Calcium signaling pathway
rtp04144
Endocytosis
rtp04510
Focal adhesion
rtp04540
Gap junction
rtp04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
109927411 (pdgfra)
04020 Calcium signaling pathway
109927411 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
109927411 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
109927411 (pdgfra)
04540 Gap junction
109927411 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
109927411 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
rtp01001
]
109927411 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
rtp04090
]
109927411 (pdgfra)
Enzymes [BR:
rtp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
109927411 (pdgfra)
Protein kinases [BR:
rtp01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
109927411 (pdgfra)
CD molecules [BR:
rtp04090
]
Proteins
109927411 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
VEGFR-1-like_Ig-like
V-set
C1-set
Adeno_E3_CR1
Ig_4
Rrn6_HB
Motif
Other DBs
NCBI-GeneID:
109927411
NCBI-ProteinID:
XP_020383017
LinkDB
All DBs
Position
1:complement(76436357..76485041)
Genome browser
AA seq
1095 aa
AA seq
DB search
MDIFWKIFLIVDCLFLEVFKGPQLVECQTVPDVYPSTVEIRVALHTSFSLKCSGENEVDW
ELPVYESFEENISRKDENNNSGNFVKSLEVHNATGIYTGRYTCYYPSLQLDEEIEGRDIY
VFVPDPDYPFIPQAYFENIVIAAEGETAEIPCRVSDPDVHVTLLNVDTNTMIATTYNNKE
GFSGLFKEGTYTCITTINGVEHRSEEYIVNRFKVADDLHVEIEAEKTVVKVGEPIFVTCL
VMDNEVVNIDWNYPRKNKGTEAHQVLKEVRQPSLKIMKTLQIEKATLEDTGLYECSVLHA
TQDTKKLKQVHIHVSDKGFINLDPNYGTEEFADLHEVKQFVVNIEAYPEPTVSWLKDNIT
LQEDNNEVMINTVKIQEIRYQSNLTLIRAKKQDSGAYTIVVKNEDNSTNHTFYLQVKVPA
KIINLVDVHHGSASGQIVSCSADGTPSPEVEWLICTDLKKCANDSLLWNVLHNNSSDISI
ETHQTKKNTIESKLTFQKVDNTVAVRCIAKNELAAVAREVKLVAHNLHSELTVAAAVLVL
LVIVIISLIVLVVVWKQKPRYEIRWRVIESISPDGHEYIYVDPMQLPYDTRWEFPRDGLV
LGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPH
LNIVNLLGACTKAGPIYIITEYCFHGDLVNYLHKNRDSFISRYSEKGKKEVDIFGINPAD
ESTRSYVILSFENNGEYMDMKQAENTQYVPMLERKGSSKYTDIQQHIYDHPPSQKNKSLT
ETSEAWNPLLDDSSDGLSFMDLISFTFQVAQGMEFLASKNCVHRDLAARNVLLAQGKVVK
ICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTSLSDVWSYGILLWEIFSLGG
TPYPGMMVDSNFYNKIKSGYRMTKPEHASSDVYDLMVKCWNSEPEKRPSFTRLAEIVGKL
LPENYKKSYKQLNDEFLKSDHPAVARMRAESSDSYIGVTYTNEDKKKDRESGFDEQRLSA
DSGYIIPLPDIDPVTDSEPGSSRNRHSSQTSEESAIETGSSSSTFIKREDETIEDMEMMD
DVAIDPSDLVEDSFL
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggacatattctggaagatattcctgatagtggattgcctcttcctggaagtcttcaaa
gggccccagctggttgagtgccagacagtaccagatgtttaccccagcacagttgaaata
agagttgctctccatacgtcattcagcctgaagtgctccggggagaatgaagtggattgg
gagttgccagtttacgaatcttttgaggagaatatcagtagaaaagatgaaaacaacaac
agtggaaactttgtgaaatcactagaggtccataatgcaacaggaatttatactggcagg
tacacctgctattacccatcactccagctcgatgaggagattgagggacgagatatctac
gtttttgttccagatcctgactatccttttatcccacaagcgtattttgaaaatatagta
atagcagcagagggtgaaactgcagaaatcccatgtcgtgtatctgatccagatgtccat
gtcactctgcttaatgtcgatactaataccatgattgctacaacctataataataaagaa
ggattcagtggcctcttcaaagaggggacatatacctgtatcacaacaatcaatggtgtg
gagcacagatcagaagagtacattgttaatagatttaaagtggcagatgaccttcatgtt
gaaatagaagctgagaaaaccgtagtgaaagtgggtgaaccaatctttgtgacatgtctg
gtaatggataatgaagtggtgaacatagactggaattatccaaggaaaaataaaggaact
gaggcacaccaagttcttaaggaagtaagacaaccaagcttaaaaataatgaagactttg
caaattgagaaagccactctggaagatactggactctatgaatgttctgtgttacatgca
actcaagataccaagaaattaaaacaggttcacatccatgttagtgacaaaggatttatt
aatttggatcccaactatgggacagaagaatttgcagacctacatgaagtcaagcagttt
gtggtgaacattgaggcttatccagagcccactgtatcatggctgaaagacaatatcacc
ttgcaagaagataacaacgaggtgatgatcaacacagtaaaaatccaggaaattaggtat
caaagtaacctgaccttaattcgtgcaaagaaacaagacagtggtgcttacactattgtt
gttaaaaatgaagataatagtaccaatcatacattttacttacaggttaaagtgcctgca
aaaatcatcaatcttgttgatgtccaccatggttctgcaagtggccagatagtttcatgt
tcagcagatgggacaccaagcccagaggttgaatggctgatatgtacagacttaaaaaag
tgtgctaatgactcattgctctggaatgttctccacaacaattccagtgatatcagtatt
gagacccatcagaccaagaaaaatactatagaaagcaagctgacctttcagaaagttgat
aacacagtggctgtgagatgcattgcaaagaatgaacttgcagccgttgcacgtgaagtc
aaactggtggctcacaatctccattctgagttgacggtggctgccgcagtcttggtgttg
ttggttattgtaatcatttctctgattgtgctcgttgtagtttggaaacagaaaccacga
tatgagataaggtggagagtcattgaatcaataagtccagatgggcacgaatacatttat
gttgatcccatgcaacttccctatgatacaagatgggagtttcctagggatggacttgtc
cttggacgaatacttggctctggggcctttggaaaggtagttgaaggaactgcttatggt
ttaagtcgctcacagcctgttatgaaagttgctgtaaaaatgttgaaacctacagcccga
tccagtgagaaacaagctctgatgtcagaactgaagataatgactcatctaggcccacat
ttaaacattgttaacctgctaggagcttgtaccaaagcaggtcctatctacattatcact
gagtactgtttccatggagatttggtaaattacctacataagaaccgagacagctttata
agtcgatattctgaaaagggaaaaaaggaagtggatatttttggtataaatcctgctgat
gaaagcacaagaagttatgtgatcctgtcctttgaaaacaatggggaatacatggacatg
aaacaagctgaaaatacccagtatgtaccgatgttggaaaggaaaggcagttccaaatac
accgatatacagcaacacatttacgatcacccaccatcacagaaaaataaatcattgaca
gagacaagtgaagcttggaaccctctcctagatgacagctcagatggcctctcctttatg
gatttaatcagcttcacctttcaagttgcccaaggaatggagtttctggcttctaaaaat
tgtgtacatcgtgatctggcagctcgtaatgttctccttgcacagggaaaggttgtcaag
atctgtgactttggtctggcacgggacatcatgcacgattccaactatgtttctaaaggc
agcacatttttaccagtaaaatggatggcacctgaaagcatatttgataacctgtacact
tcactaagcgatgtctggtcttatggcattcttttatgggaaatattctccttgggtggt
acgccatatccaggaatgatggtggactccaacttttataacaagataaaaagtggctac
aggatgactaaaccagaacatgcttcttcagatgtctatgacctgatggtgaagtgttgg
aatagtgagcctgagaagaggccttcctttacacgtcttgctgaaattgttggcaagttg
ttaccagagaactacaagaagagctataaacagttgaacgatgagtttttgaagagtgac
catcctgctgttgctcgcatgcgggcagaatcaagtgattcttacattggagttacctac
accaatgaagataaaaagaaagatcgggaaagtggatttgatgagcaaagactaagtgct
gacagtggatacatcatcccactgcctgatattgaccccgtcacagacagcgaacctggc
tcttcaagaaaccgacacagttcccagacatcagaagaaagtgcaatcgagacaggttcc
agcagctcgacttttataaagcgtgaggatgaaaccatagaagacatggaaatgatggat
gacgtagcaattgatccctcagacctagtggaagacagtttcctgtaa
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