Rhincodon typus (whale shark): 109927556
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Entry
109927556 CDS
T06055
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rtp03016
]
109927556 (trub1)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
109927556 (trub1)
Transfer RNA biogenesis [BR:
rtp03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
109927556 (trub1)
Prokaryotic type
109927556 (trub1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-GeneID:
109927556
NCBI-ProteinID:
XP_020383186
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All DBs
Position
20:34075452..34148510
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AA seq
283 aa
AA seq
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MASSSGSIALAEKLQGLNGLFAIHKKKGPTSADVLNLLKTKLLKEAGIKQHPMKRKKQVL
KLGHGGTLDSAASGVLVVGIGKGTKMLGGMLSCSKKYTTIGEFGKATDTFDALGTVTEVQ
SYDHITKDDLESTLKKFTGNIMQTPPIYSALKQNGQRLSCLVKKGEAVEAKPARPVVVFS
LSVQDYNPPLFTLNVECGGGFYVRSLVNDLGKELSSCAHVKELIRTKQGPFTLDEHALQE
EKWTISEIVKAVESCVQIVPSEAALKKLKINCQDDTEQVKEAT
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccagctcagggtccattgctttggctgagaagctgcagggtctgaatgggcta
tttgcgatccacaaaaagaaaggccccacttcagcagacgtgctgaatctcctgaaaact
aagcttttaaaagaggctggcatcaagcaacatccaatgaaaagaaagaaacaggttctg
aagttgggacatggaggaaccctggacagtgcagcatcaggagtgcttgtggttggcatt
ggcaaagggaccaaaatgcttggtggaatgttgtcctgctccaagaaatatacaacaatt
ggggaatttggaaaagccacagacacattcgatgctctcgggaccgtgacagaagtacag
tcatacgatcacataacgaaggatgacctggaaagtactctgaagaaatttacaggaaac
attatgcagactcctccaatatattctgctttgaagcaaaatgggcaacgactttcctgt
ttagtaaagaagggagaagctgtggaagctaaacctgccagacctgttgtggtttttagt
ctttctgtacaggattacaatcctcctctctttactctgaatgttgaatgtggtggtggg
ttttatgtccgcagtttggttaatgaccttggcaaagaactttcttcatgtgcccatgta
aaggagttgatcagaaccaaacagggtccttttactttggatgaacatgcacttcaagag
gagaaatggacaatcagtgaaatagtaaaagctgtagagtcttgtgtccaaatagttcca
tctgaagcagcattaaagaaattgaagataaactgtcaggacgacactgaacaagtgaaa
gaagctacttga
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