Rhincodon typus (whale shark): 109927693
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Entry
109927693 CDS
T06055
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109927693 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109927693 (parn)
Enzymes [BR:
rtp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109927693 (parn)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109927693 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
R3H
LUD_dom
Motif
Other DBs
NCBI-GeneID:
109927693
NCBI-ProteinID:
XP_048465642
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All DBs
Position
21:13162945..13277883
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AA seq
534 aa
AA seq
DB search
MDFLLFQFGLCTFKYDGAENRHIMKTFNFYIFPKPLSRNSPDVKFVCQSSSIDFLANQGF
DFNKVFRDGIPYLNREEERQLREQLEEKHNQSNGTGTPSFISPNSTKGPVVIPEEHRSFI
EKIVEKVEDLLKDDNGSIELDPCTGFQRKLIYQTLNWKFPKGAHVETLENEKKERYIVIS
KLDDDERRRREEQKRAKEQEEMNDAVGFSKVIYAISKSGKLVVGHNMLLDVMHTIHQFFC
PLPNELNEFKEVTTSVFTRLLDTKLMASTHPFKELIMNTPLAELEKRLKDAPFRAPKVES
AEGFPSYNTASEQLHEAGYDAYITGLCFISMANHLGSFLSPPEVFVPAKSKLVEPFINKL
VSSVNLIGISNFFGSDLFEDLIYLYFTSAVNTSRYAESYRIQTYAEYIEKKQEEKQTKRK
WTEESWQEVERKRLKTQYAPQPYFNQMFDFSRTSPLMEKRSMSPIQEETVSDEMEGDEVT
SKDGDSHYSANAWIDSTISETRKIKKQWQKKEDHGKTGSSANSQATLFEVPDTW
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggacttcctgctttttcagtttggactttgcacatttaaatatgatggtgcggagaac
aggcacataatgaagacctttaacttctacatatttccaaaaccactttctagaaattca
cctgatgttaagtttgtttgccagagttcgagtattgattttcttgccaaccaaggattt
gacttcaataaagtcttccgagatggaatcccatacttaaatcgggaggaagaaaggcaa
cttcgagagcagttagaggaaaagcataatcagtctaatggtacaggaacaccgtctttc
atttcgccaaattctaccaaagggcccgttgttatcccagaagaacatcgcagttttatt
gagaaaattgtggagaaggttgaagacttgttaaaagatgataatggtagtattgaactc
gatccgtgtactgggttccagcgaaaacttatttatcagaccctgaactggaaatttcca
aaaggagctcatgtagaaaccttggagaatgaaaagaaagagagatatattgtaatcagt
aagctggatgatgatgaacgcagaaggagagaagagcaaaaacgagctaaagaacaggaa
gaaatgaatgatgctgtggggttttccaaagtaatatacgccatttcaaaatcgggtaaa
ctggttgttggacataacatgctacttgatgtcatgcatacaattcatcagtttttctgt
ccattacccaatgagttaaatgaatttaaagaagttacaacaagtgtttttactaggctt
ctagacacaaaactcatggcaagcacgcatccttttaaggaactgataatgaacacccct
cttgcagagctggaaaaacgattaaaagatgcacctttcagagctcccaaagttgaaagt
gcggagggttttccgagctataacactgcctcagaacaattacatgaagcaggttacgat
gcatatataaccggcttgtgtttcatctcaatggcaaatcatctaggttcattccttagc
cctccagaagtttttgttcctgccaaatctaaactggttgaaccttttattaacaagctg
gtttcttcagttaatttgataggtatttctaacttttttggatctgatttgtttgaagat
ctgatttatctgtatttcacttcagctgtaaacaccagcaggtatgcagagagttaccga
atccagacatatgcagaatacattgagaaaaagcaggaggagaaacaaaccaagcggaaa
tggacagaggaaagctggcaggaagtggagaggaagaggctaaagacccagtatgcccca
caaccttactttaaccagatgtttgatttcagcagaacaagtcctcttatggaaaaaaga
agtatgagccctattcaggaagagacagtatctgatgaaatggaaggggatgaggttaca
agtaaagatggtgacagtcattattcggctaatgcctggatagactctacaatatcggaa
actagaaaaatcaagaaacagtggcagaaaaaggaggaccatggaaaaactggaagcagt
gcaaattcacaggccacattgtttgaagtcccagatacatggtga
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