Rhincodon typus (whale shark): 109927782
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Entry
109927782 CDS
T06055
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X3
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
109927782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109927782
03041 Spliceosome [BR:
rtp03041
]
109927782
03036 Chromosome and associated proteins [BR:
rtp03036
]
109927782
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109927782
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109927782
mRNA cycle factors
Common to processing body (P body) and stress granule
109927782
Spliceosome [BR:
rtp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109927782
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109927782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
109927782
NCBI-ProteinID:
XP_020383389
LinkDB
All DBs
Position
Unknown
AA seq
665 aa
AA seq
DB search
MSHVAVGNVLDLDQQLAGLDLTSSAGDAQSAGGAGKGRYIPPHLRNKEASKNGFGYEKDG
GWSNKEVRDPYSSFGSRADRGKSSFFNDRGRGRYDDRGRGNASDSAYDHFGSRTDRGGFG
RMDRGGFGSREGGGNSRWVEDKRDDDDWSKQLPPNERMEQELFSASNTGINFEKYDDIPV
EATGANSPPHIETFQDVNMGEIIMGNIELSRYDRPTPVQKHAIPIIISKRDLMACAQTGS
GKTAAFLLPILSQIYAEGPGEALKNAKAQDSSKYGRRKQYPIALVLAPTRELAVQIYDES
RKFAYRSKVRPSVVYGGADIGQQIRDLERGCHLLVATPGRLVDMIERGKVGLDYCKYLVL
DEADRMLDMGFEPQIRRIVEQDAMPPKDVRQTLMFSATFPKEIQILARDFLDEYIFLAVG
RVGSTSENITQKVVWVEEQDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYREGY
ACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYV
HRIGRTGRVGNLGLATSFFNEKNSNITKDLLDLLVEAKQEVPSWLENLAYEQQHRSSGRG
RSKSRFGAGFGARDYRQTSSSFNTRGNRSTGHSGPRGYGGGGYGSYYNADGYGGAYNSQV
DWWGN
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcggaaatgtactggatctagatcagcagcttgctggcctagac
ttgacatcgtcagcaggtgatgctcagagtgctggtggggcaggcaaaggacgttacatt
cctcctcacctaagaaacaaagaggcatccaagaatggctttggctatgagaaagatgga
ggatggagtaacaaggaagtcagggacccatacagcagttttggatcacgagctgatcgg
ggtaaatcgagcttcttcaatgatcgtggaaggggaagatatgatgaccgtggcagagga
aatgctagtgacagtgcttatgaccactttgggagccgcactgaccgtggaggatttggc
agaatggatcgtggaggatttggatctcgtgaaggtggtggaaatagccgttgggtggaa
gacaaacgggatgatgatgattggtcaaaacagctaccaccaaatgaacgcatggaacag
gagttgttttctgcaagtaacacaggaatcaactttgagaaatacgatgacattcctgtt
gaagcaactggtgcaaactctcctcctcacattgaaactttccaggatgtaaacatggga
gaaataataatgggcaacattgagctgagtcgttacgatcgtccaactcctgtgcagaaa
catgcaatccccatcattatatcgaagagggatttgatggcatgtgctcaaacagggtct
ggaaaaactgcagcatttttgcttcctattcttagccagatctatgcagaaggtcctggt
gaagctttaaagaatgcaaaagctcaagattcctctaaatatggtcgccgtaagcaatat
ccaattgctttggttctagcacctaccagagaacttgcagtacagatctatgatgaatcc
aggaagtttgcatatcgttctaaagttcgaccctctgtagtttatggaggagctgacatt
ggacaacagatcagagacctggagcgtggatgtcacctgcttgttgccacacctggccgt
ttagttgatatgattgagaggggcaaggttggattagactattgcaagtatttagtgttg
gatgaggctgacaggatgcttgacatgggatttgaaccacaaattcgccgtattgttgag
caggatgcaatgccaccaaaagatgtgagacagactttgatgttcagtgcaacatttcca
aaagagatccagatacttgctcgtgactttcttgatgaatacatattcttggcagttggt
cgtgtgggttccacttctgaaaacataactcagaaagtggtgtgggtggaagaacaagac
aagcgttcattcctgttggatctcttgaatgccacaggcaaagattctcttacactggtc
tttgtggagacgaagaagggtgctgattcattggaggattttctttaccgtgagggttat
gcttgtacaagtatccacggtgaccgttctcagagagatagagaagaggctctgcatcag
tttcgctccggaagatgccctatcctagttgccactgcggttgcagcccgtgggcttgac
atttctaatgtcaaacatgttatcaattttgacctacctagtgatattgaggagtacgtg
catcgcattggacgaactggtcgagttggcaaccttggtcttgccacctcattctttaat
gagaagaacagcaatattactaaagaccttttggatctgcttgtggaggctaagcaagaa
gtaccgtcctggctagaaaacttggcatatgagcaacagcataggagctcaggtcgtggg
cgatcaaagagtcggtttggagcaggatttggtgccagggattacagacagactagcagc
agcttcaatacccgtgggaaccgcagcactggccacagcggacctagagggtatggagga
ggtggttatggaagctattacaatgctgatggatatggtggagcttacaactcccaggtg
gattggtggggaaactga
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