Rhincodon typus (whale shark): 109927785
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Entry
109927785 CDS
T06055
Symbol
usp9
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rtp01002
]
109927785 (usp9)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtp04121
]
109927785 (usp9)
Enzymes [BR:
rtp01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
109927785 (usp9)
Peptidases and inhibitors [BR:
rtp01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
109927785 (usp9)
Ubiquitin system [BR:
rtp04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
109927785 (usp9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Motif
Other DBs
NCBI-GeneID:
109927785
NCBI-ProteinID:
XP_048459147
LinkDB
All DBs
Position
11:complement(41194475..41356404)
Genome browser
AA seq
2404 aa
AA seq
DB search
MTATTRGSPVGGNDNQGQAPDGQSQPPLPQNQTSSPNTSSENSPVSPPDEQGQGDAPPQL
EEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKSLDIKSEACQRFF
RDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLIELCVAKLSQDWFPLLELLAMALNP
HCKFHIYNGTRPSETVPAGVQLAEDELFARPPDPRSPKGWLVDLINKFGTLNGFQILHDR
FVSGSALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPIIEMVPQFLENLTDEELKKEAKN
EAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNALNEVNK
VISSVSYYTHRHGSPEEEEWLTAERMAEWIQQNNILSIVLRDSLHQPQYVEKLEKILRFV
IKEKALTLQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKASWTNAS
KKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKILDYSC
SQDRDTQKIQWIDRFVEELRTNDKWVIPALKQIREICSLFGEAPQNLSQTQRSPHVFYRH
DLINQLQHNHSLVTLVAENLSAYMENIRQFHKEYPEYDPQTVRSGSRYSHVQEVQERLNF
LRFLLKDGQLWLCAPQAKQIWKCLAENAVYLCDREACFKWFSKLMGDEPDLDPDINKDFF
ENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDDLELIGLEYLWRVVIQ
GSDDIASRAIDLLKEIYTNLGPRLQVNQVEIHEDFIQSCFDRLKASYDTLCVLDGDKDSI
NCARQEAIRMVRVLTVLREYINECDSDYHEERTILPMSRAFRGKHVSLVVRFPNQGRQVE
DLDIWSHTNDTIGSVRRCILSRIKANSAHTKVELFIGGELVDPADDRKLIGQLNLKDKTL
ITAKLTQISSNMPSSPDSSSDSSTGSPGNHGNHYSDGPNPEVESCLPGVIMSLHPRYISF
LWQVADLGSSLNMPQLRDGARILMKLMPPDNTTVEKLRAICLDHAKLGESSLSPNLDSLF
FGQSASQVLYLTEVVYALLMPASAPLGEDASDFQYNFLKSGGVFLVLGILTRNNFLLNAD
METRRAAYLNALKIAKLLLTAVGYGHVRAVAEAFQPVVEGSSTVSPINHATHSQAVVLQN
ALHNIPNPTSECMLRNVAIRLAQQISDEASKYIPDICVIRAVQKIIWASGCGSIQLVFSS
SEEISKIYEKTNAGNEPDSEDEHVCCEALEVMTLCFALVPTALDTLSKEKAWQTFIIDLL
LHCHSKVVRQMAQEQFFLMATRCCMGHRPLLFFITLLFTVLASTARERAKHSADYFTLLR
HLLNYAYNSNINLPNAEVLLNNEIDWLKRIRDEVKRTSETGVEETILEGHLGVTKELLAF
QTPEKKYHMGSEKGGANLIKELIDDFIFPASNVYLQYKKSGELPSEQAIPVCSAPAAINA
SFELLVALAVGCVQNLKQIVDTMTDMYYAGCEALTEWEYLPPVGPRPSKGFVGLKNAGAT
CYMNSVIQQLYMIPAIRNGILTIEGTGSDVDDDTSGDEKQDNESNVDPRDDVFSYHHHYD
KPVIGKTEDRKEYNIGVLRHLQVIFGHLAASRLQYYVPRGFWKQFRLWGEPVNLREQHDA
LEFFNSLVDSLDEALKALGHATMLSKVLGGSFADQKICQGCPHRYECEESFTTLNVDIRN
HQNLLDSLEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLAIQLKRFDYDWER
ECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDINPENQLIQNDQPDNEQPGSTKYRLVG
VLVHSGQASGGHYYSYIIQRNGGDGEKNKWYKFDDGDVTECKMDDDEEMKNQCFGGEYMG
EVFDHMMKRMSYRRQKRWWNAYILFYERMDTIAKDNELIKYISELEISIKPHQIKMPSVI
ERSVRKQNVQFMHNRMQYSLEYFQFIKKLLTCNSVYLNPPPGQDHLLPEAEELAMISIQL
AARFLFNTGFHTKKIVRGPASEWYDALCILLRHSKNVRCWFAHNVLFAYPNRFSEYLLEC
PSTEVRSAFAKLIVFIAHFSLQDGPCPSPFASPGPSTQAFDNLSLSDHLLRAVLNLLRRE
VSEHGRHLTQYFNLFVMYANLGVAEKTQLLKLNVPATFMLVALDEGPGPPIKYQYAELGK
LYAVVSQLVRCCDVSSRMQSSINGNPPLSNPYGDPNLSQPIMTIQQSVADILFVRTSYVK
KIIEDCSNSEETIKLLRFCCWENPQFSSTVLSELLWQVAYSYTYELRPYLDLLLQILLIE
DSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAYQCIKCMVALFSSCPVAYQILQV
NFFY
NT seq
7215 nt
NT seq
+upstream
nt +downstream
nt
atgacagccacgacccgtggctctcctgtaggagggaatgacaaccagggccaggcgcct
gatggacagtctcagcctcccctcccacagaatcagacatcttctccaaatacatccagt
gagaactcgccagtgagccctcctgatgagcaaggtcagggtgatgctcctcctcaactt
gaggaggaggagcctgcatttcctcacactgatttggccaagctggatgatatgattaat
agacctcgttgggtagttccagtgttgcctaaaggtgaattagaagttctattagaagct
gctatagatcttagtaaaaaaagccttgatatcaaaagtgaagcatgtcagcgttttttc
cgtgatggtctcacaatttccttcacaaaaattctaacagatgaggctgtgagtggttgg
aaatttgaaatccacaggtgtattataaataatactcatcgcctcatagaactatgtgtg
gccaagctatcccaggattggtttccccttcttgaacttcttgctatggccttaaatcct
cactgcaaatttcatatctacaatggtacacgcccatctgagactgttcctgcaggagtc
cagctagctgaagatgaactctttgctcgaccgcctgacccacgttcaccaaagggttgg
cttgtcgatctcatcaacaagtttggaacattgaatggatttcagattctacatgatcga
tttgtcagtggttcagcattaaatgttcagataattgcagcactcatcaaaccttttgga
cagtgttatgaatttcttactttgcacacagtgaagaaatacttccttcctataatagaa
atggttccacagtttctagaaaatctgacggatgaggagctgaaaaaagaagcgaagaat
gaagccaaaaatgatgcattatctatgataataaaatcactgaaaaacttagcttcacgg
gttcctgggcaggaggaaactgtcaaaaatttagaaatatttaggctaaaaatgatacta
aggttgttacaaatttcatcttttaatggaaaaatgaatgcactaaatgaagttaacaag
gtgatttccagtgtctcttattatactcatcgccatggcagtccagaagaagaggagtgg
ttgacagcagagagaatggcagagtggattcaacaaaataacatcttgtcaattgtgttg
cgtgacagtctacatcagccacaatatgttgaaaaactagagaagatacttcgttttgtc
attaaggaaaaagcgctcaccctccaagatcttgacaacatttgggcagcacaggctggt
aaacatgaagcaattgtgaagaatgtccatgaccttcttgcaaaattggcttgggatttt
tctccagaacagcttgaccacctttttgattgttttaaggcaagttggacaaatgcaagt
aaaaagcaacgtgaaaaactgttagagttgattcgccgccttgctgaggatgacaaagat
ggtgtgatggcacacaaagtgttgaacctcctgtggaatttagcgcacagtgatgatgta
cctgttgacatcatggaccaggctttaagcgcgcacatcaaaatcctggattatagctgt
tctcaggaccgagacactcagaagatccagtggatagatcgttttgtggaggaactacgt
actaatgacaaatgggtcattcctgctttgaaacaaattagggaaatctgtagtctattt
ggagaagcaccgcagaatttaagccagacccaaagaagtccacatgtgttctatcgacat
gacttgattaaccaacttcaacacaatcattcattggtcactctggtagctgaaaacctc
tctgcttacatggagaatataagacaattccataaagagtacccagagtatgatccacaa
actgtacggtcagggagtcggtatagccatgtgcaagaggtccaagagcgactaaatttc
ttgagatttttattgaaggatggccaattgtggttgtgcgctcctcaagccaagcaaatc
tggaagtgtttagctgagaatgctgtctacctttgtgatcgtgaagcctgttttaagtgg
ttttctaagttgatgggagatgaacctgacttagacccagacataaacaaggacttcttt
gaaaataatgtcctgcaactggatccttctctcttaactgaaaatggaatgaagtgcttt
gaacgttttttcaaagctgtgaactgtcgtgaagggaagcttgtagcaaaacggcgtgct
tatatgatggatgatctagagttaataggactggagtatctttggagggttgtaattcaa
ggaagtgatgacattgcaagtagagcaatagacctgctaaaagaaatatacacaaacctt
ggtccacgattacaggttaatcaggtagagattcatgaagacttcattcagtcctgtttt
gatcgattgaaggcctcttacgatacactgtgtgtactagatggtgataaagacagtatt
aattgtgcaaggcaggaggcaatacggatggtacgtgtattgacagtgttgcgtgagtac
ataaacgaatgcgacagtgactaccatgaagaacggacgattctaccgatgtctagagct
tttcgtggaaaacatgtatcacttgttgtacggtttccaaatcaaggacgccaagtggaa
gatttggacatttggtctcatacaaatgacaccattgggtctgttagacgctgtatcctc
agtcgaataaaagcaaacagtgcacatacgaaagtagaactatttattggtggtgaactt
gtagaccctgccgatgatcggaaattaatcgggcagttaaatctgaaagataaaaccctt
attacagccaagctaacgcagataagttcaaatatgccttcaagccctgatagctcttct
gattcttcaacgggctcccctggaaatcatggtaaccactacagtgatggcccaaatcct
gaggtagaaagctgtttacctggagtgatcatgtccttacacccgcgatacatttccttt
ctttggcaagttgcggatctgggcagtagcctaaacatgccgcagctgagagatggtgct
cgcatccttatgaagctcatgcctcctgataacactacagttgaaaaacttcgtgctatt
tgcttggatcatgcaaaacttggggagagcagtctcagtccaaatcttgactctcttttt
tttggacagtctgcttctcaagtgttatacctaactgaggtggtgtatgctttgttaatg
cctgccagtgcacctttgggagaagacgcaagtgatttccaatacaacttcttaaaaagt
ggaggtgtattccttgttcttggcatactaaccaggaataacttcctgctaaatgcagac
atggagactcgaagggctgcgtatcttaatgcattaaaaatagccaaattattgctcact
gcagttggatatggtcatgttagagctgtggcagaagcatttcagccagttgtggaaggt
tccagtactgtttcaccgataaatcatgctactcatagccaggctgtagttctgcagaat
gctctgcataacattccaaaccctacttcagaatgtatgttgcgaaatgttgccattcgc
ctggcacagcaaatttcagatgaggcttcaaaatacatcccagacatttgtgttattaga
gcagtgcaaaagattatctgggcctctggctgtggttcaatacagcttgtattcagttca
agtgaagaaattagcaagatatatgagaaaactaatgcaggaaatgaaccagactctgaa
gatgaacatgtttgctgtgaagcactggaagtgatgaccttgtgctttgcactggttcca
acggcgcttgatacacttagtaaagaaaaggcatggcagaccttcataatagatttgctg
ctgcattgtcacagcaaagtagttagacagatggcccaagagcagttcttcctgatggct
accagatgctgtatgggacatcgacctctacttttcttcattactctactcttcacagtg
ctagcaagtactgcaagagagagagcaaagcattcagcagactactttacattgttgagg
catctccttaactatgcatacaacagtaacattaacctgcccaatgcagaagttctgctc
aacaatgaaattgactggctcaagcggattagagatgaggtgaaaaggacaagtgaaact
ggtgttgaagaaacaattctagagggtcatcttggagttacaaaggagcttttggcattc
cagacacccgaaaagaaatatcatatgggctcagagaagggtggagcaaatcttattaag
gagctgatagatgacttcatatttccagcctctaatgtttatctccagtataagaagagc
ggagaattgccatctgagcaggccataccggtctgtagtgcacctgctgcaatcaatgcc
agctttgagttgttggtagcactggctgttggctgtgtgcaaaatctcaaacaaatagtg
gatactatgacggatatgtattatgcaggttgtgaagcattgacagagtgggaatatttg
ccaccagtaggaccgcgtccatcgaaaggatttgtaggattaaagaatgctggtgctacg
tgttacatgaactctgttattcagcagctgtacatgatcccagctattagaaatggtatc
cttactattgaaggcactggtagtgatgttgatgatgatacatctggtgatgagaagcag
gataatgagagcaatgttgatcctagagatgatgttttcagttaccaccaccattatgac
aaacctgtaattggaaaaactgaagaccggaaggaatacaatattggggtcctgagacat
ctgcaagtcatttttgggcatttggctgcctcaagattgcagtactatgtgcctcgaggt
ttctggaagcagttcaggctttggggtgaaccagtcaaccttcgagaacaacatgatgct
ttggaattcttcaactctttagtggatagtctggatgaagctttgaaagctcttggacat
gcaactatgctcagcaaagttcttggaggttcctttgctgatcagaagatttgtcaaggc
tgtccacacagatatgaatgtgaggaatccttcacaacactgaatgtcgacattagaaat
catcaaaatctgcttgattcactcgaacagtatgtcaaaggagacctactggagggcgcc
aatgcgtaccattgtgagaaatgcaacaaaaaggttgacacagtgaagcgtttactaata
aagaagctgccaccagttttagcaattcagctgaagcgatttgactatgactgggaaagg
gaatgtgcaattaaattcaatgactattttgaatttccacgagagctggacatggaacct
tacactgtggccggggttgccaagttggaaggggatgacattaacccagaaaatcagttg
attcagaatgaccagccagataatgaacagcctggtagcactaaatatagactggttggt
gtgttagtgcatagtggtcaggcaagtggaggacattattactcatacatcattcaacga
aacggtggcgatggtgagaaaaacaaatggtataagtttgatgatggtgatgtaactgag
tgcaaaatggatgatgatgaagagatgaaaaaccagtgctttggtggcgagtatatgggc
gaagtttttgaccatatgatgaaacgaatgtcatacaggcggcaaaaacgatggtggaat
gcgtacatacttttttatgaacgtatggacacaatagctaaagataatgaattaattaag
tacatttctgagctggagattagtataaaaccacaccagataaaaatgccaagtgtcatt
gaacgaagtgtacggaaacagaatgtgcagttcatgcataatagaatgcagtatagcctg
gagtatttccaatttattaagaaactactgacctgtaacagtgtctacctgaatcctccg
cctgggcaagatcatctgttaccagaagctgaagaactggctatgatcagtattcaactt
gctgcgagatttttgtttaatactggatttcacacaaagaaaatagttcgtggcccagca
agtgaatggtatgacgcattgtgtatcctgctccgtcacagcaagaatgtacgctgttgg
tttgcacataatgttctttttgcctatccaaatcgcttctctgagtaccttctggaatgc
cccagtacagaagtgaggagtgcttttgctaagctcattgtatttattgcacatttctcc
ttgcaagatggaccatgcccttccccatttgcatccccaggaccttccactcaggctttc
gataatttaagtctcagcgatcacctcctcagagctgttctgaacctactccgacgagaa
gtttctgagcacggacggcacttgacacagtacttcaacctgtttgttatgtatgccaat
ctgggtgtggctgagaagacacagttattaaaactgaatgtgcctgcaacatttatgctt
gtagctttggatgaaggccctggaccacctattaaataccaatatgcagaactgggcaaa
ctttacgctgtggtgtcacagttggttcgttgctgtgatgtatcatcacgcatgcagtct
tcaattaatggaaatccacccttatcaaatccctatggtgatcctaacttgtcccaacct
ataatgactatccagcagagtgttgcagacatcttgtttgtacgaactagttatgtgaaa
aagattattgaagactgcagcaattctgaagaaaccatcaaactgcttcgcttctgttgc
tgggaaaatccacagttctcttccactgtgctcagtgaactcctctggcaggtggcatat
tcttatacctatgagcttaggccctacttagatcttcttctgcaaatcctgcttatagaa
gactcttggcaaacccacaggattcataatgcactgaaagggattcctgatgacagagat
ggactgtttgacaccatccaacgttctaaaaaccactaccagaagagagcctaccagtgt
attaaatgcatggttgccctcttcagctcatgtcctgtagcctaccagatccttcaggta
aattttttttattaa
DBGET
integrated database retrieval system
