Rhincodon typus (whale shark): 109928450
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Entry
109928450 CDS
T06055
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109928450 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109928450 (xab2)
03041 Spliceosome [BR:
rtp03041
]
109928450 (xab2)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109928450 (xab2)
Spliceosome [BR:
rtp03041
]
Complex B
Other components
Prp19-related factors
109928450 (xab2)
Complex C
109928450 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
ARM_TT21_C
TPR_16
ARM_TT21
TPR_MalT
TPR_1
RPN7
NRDE-2
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
109928450
NCBI-ProteinID:
XP_020383974
LinkDB
All DBs
Position
38:10549134..10596263
Genome browser
AA seq
849 aa
AA seq
DB search
MSGSSQKHDVIFEEDDLPYEEEIIRNPYSVKCWVRYIEFKQSAPKHVVNMIYERALKELP
GSYKLWYNYLKQRRKQVKGKCIIDPAFEEVNNCHERALVFMHKMPRIWLDYCQFQVDQCK
VTRTRRTFDRALRALPVTQHYRIWPMYLKFVRLFPLSETAVRVYRRYLKLSPENAEEYIE
YLRSIDRLDEAAVRLAGIVNDESFVSKEGKSNYQLWHELCHLISTNPDKVKSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQAEEDDIDLELRLARFEQLINRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPREIINTYTEAVQTVDPLKATGKPHTLWVSFAKFYEENSQIQDARTIFEKATKVN
FKHVDDLASVWCEYGEMELRHENYDEALRLLRRATAVPARKAEYFDSTEPVQNRVYKSLK
VWSMLADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGV
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPPKFAKTIYLLYAKLEEE
YGLARHAMAVYERATKAVEPLEQYEMYNIYIKRAAEIYGVTHTRGIYERAIEVLPDEHAR
DMCLRFSDMECKLGEIDRARSIYSYCSQLCDPRITPSFWQTWKEFEMRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTNATGTVSDLAPGQSGMDDMKLLEQKAQQLAEEAER
EKPKPKDKILFVRSDASRSELAELTKQANPDEIDIDDDDDDEEGDEEPDEVPLEQKTVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgagcggttcttcacagaaacacgatgttatttttgaagaagatgatctgccatatgaa
gaagagatcattcgcaatccttactctgttaaatgctgggtccgctacatagagtttaag
cagtctgcacccaaacatgtggtgaacatgatttatgagagagcgcttaaagaacttcct
ggcagttacaagctgtggtacaattacctgaaacagaggcggaaacaggtgaagggaaaa
tgtatcatagaccctgcatttgaggaggttaacaactgccatgagcgagccctggttttc
atgcacaagatgccacgtatttggttggactactgccagttccaggtcgatcagtgtaag
gtaacgagaacacgtcgaaccttcgatagggctctgcgtgccctccctgtcactcagcat
tatcgcatctggcccatgtacctgaagtttgttcgtttgtttccactgtcagagactgca
gtcagagtctataggcgctatctgaagctgtcccctgaaaacgccgaagagtacatcgag
tatctccgctccattgatcgtctggatgaggctgcagtacgactcgctggcatcgtcaac
gatgaatcctttgtctcaaaagaggggaaatcaaactaccaactgtggcatgagctttgc
catctcatttctacaaacccagacaaagtgaagtccctgaatgttggagccattatccgg
ggaggcctgactcgcttcaccgaccaactagggaagctttggtgttctttagctgactac
tacattcgaagtggtcattttgaaaaggccagagacgtgtatgaagaggcgattcagaca
gtgatgacagttcgagatttcacccaagtctttgatagttatgcacagtttgaggagagc
atgattgcagctaaaatggaaacaacagcagaaatggggcaagcagaagaagatgatatc
gatctagagcttcgattggcacgatttgagcagcttataaacagacgtcccctccttttg
aacagtgtactgcttcggcagaacccacacaacgttcacgagtggcataagcgggtcaaa
ctgtatgaaggaaagccacgagagatcattaacacgtacacagaagcggtgcagacggtt
gacccattaaaagccactggaaagccacatacgctctgggtttcgtttgcaaagttttat
gaagaaaacagtcaaattcaagatgctcgaaccatatttgaaaaagccacaaaagtaaac
ttcaagcacgttgatgatcttgcgagcgtttggtgtgaatatggggagatggaactgcgg
catgaaaactatgacgaggctcttcgattgctgaggcgagctaccgcagtacctgcaagg
aaagctgagtactttgattcaacagaacccgtccagaacagagtgtacaagtcattgaaa
gtctggtccatgttagcagatctggaggagagtctcggcacttttaagtccacaaaagct
gtttatgacaggattatagatctccgaattgccacgccgcaaataatcatcaattacgcg
atgtttctggaggagcataactactttgaagaaagttttaaggcttatgagaggggggtt
gctctatttaagtggcccaacgtgtacgacatttggaacacttaccttaccaaattcatc
gatcggtacggtggaaagaaactggaacgagcacgagacctgtttgagcaagctcttgat
gggtgtccaccgaaatttgccaaaactatttaccttctgtatgccaagctggaggaggag
tacggtttagctcgacatgccatggctgtgtatgaaagagcaaccaaggcagtcgagcct
ttggagcagtatgagatgtacaacatctatatcaaaagagcagccgaaatctacggagtt
acccacacaaggggcatctacgagagggcaattgaggtgttgccagatgaacatgctcgt
gatatgtgcctgcggttctctgatatggaatgcaaactgggtgaaatcgatcgggcccga
tccatttactcttactgctctcaactctgcgatccaaggataacaccgtcgttctggcag
acttggaaggaatttgagatgcggcatggtaacgaggacactattcgtgaaatgttgcgg
attaaacggagtgtgcaggccacatacaatacccaggtcaattttatgtcgtcgcagatg
ctaaaagcctccacgaatgccacaggcacagtctctgatcttgcacctggacaaagtgga
atggatgacatgaaactgctggagcagaaagcgcaacagttggcggaagaggctgagagg
gaaaaacccaaacccaaagacaaaattctatttgtcaggagtgatgcgtctcgcagtgag
cttgctgagcttacgaaacaagccaatcccgatgagattgacattgacgatgatgatgac
gatgaggaaggtgatgaagaacctgacgaggtgccacttgagcagaagacagtgccaaca
gcagtgtttgggggcctgaaggatgactga
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