Rhincodon typus (whale shark): 109928462
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Entry
109928462 CDS
T06055
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03013
Nucleocytoplasmic transport
rtp03015
mRNA surveillance pathway
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109928462
09122 Translation
03013 Nucleocytoplasmic transport
109928462
03015 mRNA surveillance pathway
109928462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109928462
03041 Spliceosome [BR:
rtp03041
]
109928462
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
109928462
Spliceosome [BR:
rtp03041
]
Common components
Common spliceosomal components
Cap binding complex
109928462
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
Vfa1
DUF1664
BEM4-like_N
C24B10_03
AAA_11
OmpH
Motif
Other DBs
NCBI-GeneID:
109928462
NCBI-ProteinID:
XP_020383994
LinkDB
All DBs
Position
3:2121591..2181062
Genome browser
AA seq
792 aa
AA seq
DB search
MSRRRHSDDNDGQPHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEADL
PNYKSKILRILCAVARQLPEKLTVYTTLVGLLNARNYNFGGEFVEAMVRQLKETLKTNLY
NEAVFAVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRCDWYVYAVLSSLPWVG
KELYEKKDVEMDRILLQIESFLKRRQKHHVPMLQCWTAEQPHPQEEYLDCLWAQIQKMKK
DRWQEKHILRPYLAFDSVLCEALQHNLPPFTPPPHTKDSVYPMPRVIFRMFDYTDAPEGP
VMPGSHSVERFVIEENLHCIVKSHWRERKTCAAQLLSYPGKNKIPLNYHIVEVVFGELFQ
LPSPPHIEVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRIDTMNTICIDRFINWFSHHL
SNFQFRWSWDDWSDCLALDPDQAKPKFLREVLEKCMRLSYYQRIVDIVPENFAALLPANP
LCIYKYGDESNSSLPGYAVAVSVCSAIKSKASNDEILSILKDLPNPNQEDDDDDEGFSFN
PLKIEVFVQTLLHLAAKSFSHSFSALAKFHEIFKTLAEGDEGKLHVLRVMFDVWKCHPQM
MAMLVDKMIRTQIVDCAAVANWIFSSEMAHDFTRLYVWEILHSTIRKMNKHVQKVQKELE
ETKDKLDKQHKRRDSDDDYDQNSDEDEDGPLEEQIERLQEKVESAQSEQKNLFLVIFQRF
IMILTEHLARCETGGIDFNTPWYKNCIGRLQQIFLQHHQIIQQYMVTLENLLFTAELDHH
ILAVYQQFCALQ
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaagacggcacagtgacgataatgacgggcaacctcacaaacggagaaggaca
tctgaaccaattgaaattgaagatcggttggaatctttgatatgtcgtgtaggagaaaag
agcacatcttcgttggagagcaacttggaaggtctagccggagttttagaagctgacctg
ccaaactataaaagtaaaatcctaagaatactttgtgcagtagcacgacagcttcctgaa
aagttaactgtgtacacaacactggtggggctattaaatgcaaggaactacaactttggt
ggagaatttgttgaagctatggttagacaactcaaggaaactttgaaaactaatttatac
aacgaggcagtttttgctgtacgcttcctgtctgatcttgtgaactgccatgtgattgca
gctccttcaatggtggcaatgtttgaaaactttgtcagcgtaacgcaggaggaagatgta
ccgcaggtacgctgtgactggtatgtgtatgcagtactctcttctctgccctgggttgga
aaggagctgtatgagaaaaaggatgtagagatggatcgaatcctgttacagatcgaaagt
tttctgaagagacgccaaaagcatcacgtaccaatgttacagtgctggactgctgaacaa
cctcatccacaggaggagtacttggattgcctttgggcgcaaattcagaaaatgaagaaa
gatcgttggcaggagaaacacatcttgaggccgtatttggcttttgacagcgtactctgt
gaggctttgcaacataacttgccacctttcactccacctcctcacacaaaagactccgtc
taccctatgccacgagtcattttcagaatgtttgactacacagatgcccctgagggccca
gtaatgcctggtagccactctgttgagagatttgtaattgaggagaatctgcactgcatc
gtcaaatctcattggagggaaagaaaaacatgtgctgcacagctgcttagttatcctgga
aaaaacaagattcctctgaattaccatatagttgaggttgtcttcggagagcttttccag
ttgccctcaccccctcacattgaagtcatgtatacaacactgttgattgaactctgcaag
ctgcagcctggctctttaccgcaagtgcttgcacaagctacagagatgctatatatgcgg
atcgatactatgaatacaatttgcatagacagattcatcaattggttttctcatcatttg
agtaactttcagttcagatggagctgggatgattggtctgattgtttggctttggaccct
gaccaagccaaaccaaagtttttgcgtgaagtgttggaaaaatgcatgaggctttcctat
tatcaaaggatagtggatattgtacctgagaactttgcagctttgttaccagcaaatcca
ctgtgtatttacaagtacggtgatgagagcaacagttctctgcctggttatgctgtggct
gtcagtgtctgcagtgctattaaaagcaaagcaagcaatgatgagatcttgagcatacta
aaagacctaccaaatcctaatcaagaggatgatgatgatgatgaaggattcagctttaat
cctctgaagattgaagttttcgtgcagactttacttcacttggctgccaaatccttcagc
cattccttcagtgctttggcaaagtttcatgaaatttttaagactttggctgaaggtgat
gagggcaagctgcatgtactaagagtcatgtttgatgtttggaagtgtcatcctcagatg
atggccatgttggttgataaaatgatcagaacacagattgtagactgtgcagcagtagca
aactggatcttctcttcagaaatggcacacgatttcactaggttgtatgtctgggagatt
cttcactccaccatccgaaagatgaacaaacatgtgcaaaaggtccaaaaggagcttgaa
gagacgaaagacaaactggataaacagcacaaaagacgagacagtgatgatgactatgat
cagaacagtgatgaagatgaagatggtcctttggaagaacagattgaacgtcttcaggag
aaggttgaatctgctcaaagtgagcagaaaaacctcttcttagtaattttccagcgtttt
ataatgatcctgacagaacatcttgcaaggtgtgaaactggtgggattgattttaataca
ccttggtataagaactgcattggacgtttacagcaaattttcctccagcatcaccaaatc
attcaacagtacatggtcactctggagaatctgctgttcacagctgagctggaccaccat
atactagccgtctatcagcagttctgtgctcttcagtag
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