Rhincodon typus (whale shark): 109928753
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Entry
109928753 CDS
T06055
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03030
DNA replication
rtp03420
Nucleotide excision repair
rtp03430
Mismatch repair
rtp03440
Homologous recombination
rtp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109928753 (rpa1)
03420 Nucleotide excision repair
109928753 (rpa1)
03430 Mismatch repair
109928753 (rpa1)
03440 Homologous recombination
109928753 (rpa1)
03460 Fanconi anemia pathway
109928753 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109928753 (rpa1)
03032 DNA replication proteins [BR:
rtp03032
]
109928753 (rpa1)
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109928753 (rpa1)
Transcription factors [BR:
rtp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
109928753 (rpa1)
DNA replication proteins [BR:
rtp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
109928753 (rpa1)
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
109928753 (rpa1)
MMR (mismatch excision repair)
109928753 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
109928753 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
109928753
NCBI-ProteinID:
XP_020384262
LinkDB
All DBs
Position
26:complement(7265525..7325856)
Genome browser
AA seq
613 aa
AA seq
DB search
MAIRLSEGAISSIVQGGTPSQPLLQVISIRRITNGPPRYRVLMSDGIHTLSSFLLATQLN
YMGDEGLIAVNCVCQINRFICNTMKDGRRAVVIVDLKVVKPADQVNGRIGNPVPINEGQA
QQSAALANQSAVKPMQNGYASDTASAHSTVAKSESRISNKPGGIRGLPSSSAGSQTKVVP
IACLNPYQSKWTIRARVTNKSQIRTWSNSRGEGKLFSIELLDESGEIRATAFTDQVDKYF
PLIEVNKVYYVSKGTLKTANKQYTSVKNDYEMTFTNETTVIPCDDSDDLPTVQFEFVPID
QLENKNKDTMLDVIGVCKSFEDVSKITVKSNNREVSKRNVCLLDMSGKIVTATLWGEDAE
KFDGSQQPVVAIKGARLSDFGGRSLSVLSSSMILVNPDIPEAFKLRAWFDTDGHVMEGTS
ISEVKGSSFGGGNTNWKMLLEVKNENLGHGDKADYYTTVGTIVYLKKENCMYQACPTPEC
NKKVVDQQNGLYRCEKCDREFPNFKYRMILSINLADFGENQWVTCFQETAEAILGQNATY
LGELKESNEQAFEEIFQNANFRSYTCRIRVKLETYNDESRIKATMMDVKPVDHKEYSKRL
IMNIRKHAATQAY
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcgattcgactgtcggagggagctatttcgtctatagtccaaggaggaaccccttca
caaccacttttacaagttattagtatccgacgcattacaaatgggcccccaaggtatcgt
gtgctaatgagtgatggaatccatacactgtcttcattcctgcttgcaactcagctgaat
tatatgggagatgagggtcttattgcagtaaactgtgtctgccagatcaaccggttcatc
tgtaatacaatgaaggatggaaggcgtgccgttgtgattgttgacttaaaagttgtcaag
ccagctgatcaggtgaatgggagaattggtaatccagtgccaatcaatgaaggtcaggca
cagcagtcagctgctcttgccaatcagtcagcagtcaaaccaatgcagaatggctatgca
tctgatactgcttcagcacacagcaccgtagcaaaatctgaaagcaggatatcaaacaag
cctggtggtatcagaggactacccagcagctctgcaggatcacagaccaaagtggtgccc
attgcttgcctcaatccctaccagtcaaagtggacaattcgggctcgtgttaccaataag
agtcagattagaacatggagcaactcccgtggagagggaaagctattttccattgagctg
ctggatgagagtggtgaaattagagccacagctttcactgaccaggtggataagtacttc
ccacttattgaagtgaataaggtatattatgtgtcaaaaggaacattgaagactgccaat
aagcagtatacatctgtgaagaatgattatgagatgacttttactaacgagaccactgtg
atcccttgtgatgactccgatgatttgccaacggtccaatttgagtttgtgccaatagat
cagctggaaaataagaacaaggatacgatgcttgatgtaattggagtatgcaagtcattt
gaagatgtcagtaagataacagtgaagtcaaacaatcgagaagtatctaagaggaatgtt
tgtctgttggatatgagtggaaaaattgtcactgctacgctgtggggtgaggatgctgag
aagtttgatggatcacagcagccagtggtggctattaaaggagcccgactttcagatttt
ggtggccgatccctatctgttttgtcgtccagcatgatactggttaaccctgatattcca
gaggcttttaagctgagggcatggtttgatacagatggccacgtgatggaagggacatca
atttcagaagtaaagggtagttcatttggtggaggaaacacaaactggaagatgttgctt
gaagttaaaaatgagaacttaggtcatggagataaggctgactattacaccactgtaggt
acaattgtgtatttgaagaaggaaaactgcatgtaccaggcatgccccactccagagtgc
aacaagaaggttgtggatcaacagaatggtctttataggtgtgagaaatgtgatcgcgaa
tttcccaacttcaaatatcgtatgattttgtcgataaatctagcagactttggagaaaac
cagtgggtcacatgtttccaggagactgccgaggcaattcttggtcagaacgctacttat
cttggagaactaaaggaatcaaatgaacaagcctttgaagaaatcttccagaatgcaaat
tttaggtcatacacctgcagaattcgtgtcaaacttgaaacatacaatgatgaatctcgc
atcaaagcgacaatgatggatgtgaaaccagtggaccataaggagtacagcaagagactg
ataatgaatattagaaaacatgcagctacacaagcttactga
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