Rhincodon typus (whale shark): 109928766
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Entry
109928766 CDS
T06055
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03030
DNA replication
rtp03410
Base excision repair
rtp03420
Nucleotide excision repair
rtp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109928766 (rfc5)
03410 Base excision repair
109928766 (rfc5)
03420 Nucleotide excision repair
109928766 (rfc5)
03430 Mismatch repair
109928766 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtp03032
]
109928766 (rfc5)
03036 Chromosome and associated proteins [BR:
rtp03036
]
109928766 (rfc5)
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109928766 (rfc5)
DNA replication proteins [BR:
rtp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
109928766 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
109928766 (rfc5)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
109928766 (rfc5)
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
109928766 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
109928766 (rfc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_assoc_2
AAA_11
AAA_22
AAA_lid_RFC1
AAA_14
ResIII
RuvB_N
DEAD
AAA_24
DUF815
AAA_16
AAA_5
AAA_19
ATPase_2
nSTAND_NTPase5
PhoH
AAA_7
AAA_30
Thioredoxin_6
DNAX_ATPase_lid
bpMoxR
Motif
Other DBs
NCBI-GeneID:
109928766
NCBI-ProteinID:
XP_020384279
LinkDB
All DBs
Position
24:14641380..14687002
Genome browser
AA seq
333 aa
AA seq
DB search
MATGKEAKSRNLPWVEKYRPQTLDDLISHQDILNTIQRFISEDRFPHLLFYGPPGTGKTS
TILACAKRLYKGKELNSMVLELNASDDRGIDIVRGPILNFASTRTIFKKGFKLVILDEAD
AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEQMIPRLEF
VIKEENVDITQDGLKAIVTLSNGDMRRSLNILQSTNMAYDKVSEETVYTCTGHPLKSDIA
NILDWMLNKDFTTAYRNIMELKTLKGLALHDILTEIHTFVHRVDLPPSVRTHLLIKMADI
EYRLASGTNEKIQLSSLIAAFQVARDMVVAEAE
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggggaaggaggcgaagagccggaatcttccctgggtggaaaagtatcggcct
caaaccctagatgatcttatttctcatcaggacatactgaatacaattcagcggttcatc
agtgaagatcgtttcccacacctgctattttatgggccgccaggaactgggaaaacatct
actattttggcctgtgccaaacggctctataagggcaaagagctaaactcaatggtttta
gagctgaatgcctctgatgaccgaggtattgatatagtacgtggacctatattgaacttc
gccagcacaagaaccattttcaaaaagggttttaagctcgttatcctagatgaggcagat
gcaatgacgcaagatgctcagaatgctctcagaagggttattgagaaatttacagagaac
accagattttgcctgatctgtaactacctgtcaaagatcatccctgctttacagtctcga
tgtaccaggttccgatttggaccgctgtcaccagaacagatgattccaagattggagttt
gtcatcaaagaagaaaatgttgacataactcaagatggactgaaagccattgtgacactc
tctaatggtgacatgcgccgatctttgaatattttgcagagcacaaatatggcatatgat
aaagtgagcgaggaaacagtgtacacctgtactggtcatccattaaaatccgacatcgca
aacatccttgactggatgttaaacaaagacttcaccactgcatacaggaatatcatggaa
ttaaagacattaaaaggtttagccctgcatgatattctgactgagatccatacttttgtg
cacagagttgatttgccaccttcggttcgtactcatttattgatcaagatggctgatatt
gagtacagattggcttcaggaactaatgagaaaattcaactgagttcactcattgctgca
tttcaagttgcccgtgatatggttgttgctgaagctgaatga
DBGET
integrated database retrieval system
