Rhincodon typus (whale shark): 109928839
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Entry
109928839 CDS
T06055
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X3
KO
K13217
pre-mRNA-processing factor 39
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
109928839
Spliceosome [BR:
rtp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
109928839
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
TPR_14
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
Mad3_BUB1_I
SlyX
TPR_MalT
DUF2229
Motif
Other DBs
NCBI-GeneID:
109928839
NCBI-ProteinID:
XP_020384358
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All DBs
Position
8:29534009..29552042
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AA seq
359 aa
AA seq
DB search
MRHRIIEVRQEIYNHNENEVSRRWAFEEGIKRPYFHVKPLEKIQLKNWKDYLDFEIENGT
LERVVVLFERCLVACALYEDFWIKYAKYMENHSSEAVRHVYSRACTVHLSKKPMVHLLWA
AFEEQQGNINEARRILKMLEESVSGLAMVRLRRVSLERRHGNMDEAEFLLQDAIKNSKTP
NEASFYAVKLARLLFKVEKSLPKARKVLLEAIDFDKESTKLYLNLLELEYNSDLKLNEEN
ILNAFDKAISSSMAIETRIAFSQRKVEFLEDFGSNVKRLMVAYDDHQQLLKEQESSKRKA
ENGSEEPEEKKQRSDATLTSAQLMSGDLQANQSAYNYNAWYQYNYATPWNYGQYYPPPT
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcatagaataattgaagttcgccaggaaatatataatcataatgagaatgaagtt
agcagacgatgggcttttgaagaagggattaaacggccttactttcacgtaaaaccattg
gaaaaaatacagctaaaaaactggaaagattatcttgactttgaaatagaaaatggaact
cttgaacgtgtggtggttttgtttgagaggtgtcttgttgcttgtgccctttatgaagac
ttctggataaagtatgctaaatacatggaaaaccacagtagtgaagctgtgcgacatgtg
tacagcagagcatgtacagttcatctatcaaagaaacccatggtacatttactttgggca
gcttttgaggaacagcaagggaacattaacgaagctagaagaatcttgaaaatgctggag
gaatctgtatcagggttagccatggtccgcttaagacgagtaagcttagaacgccgccat
ggaaatatggatgaagcagaatttctgcttcaggatgcaattaaaaacagcaaaacgccc
aacgaagcatctttctatgctgtgaagttggctcgtcttttattcaaagtagagaaaagc
cttcctaaggccaggaaggtcctactagaagcaatagactttgataaggaaagcaccaaa
ctatatctaaatcttttggaacttgaatacaattcagatctcaaactgaatgaagaaaac
attctgaatgcttttgataaagcaataagtagctcaatggctatagaaacaaggatagcc
ttctcccagcggaaagttgaatttttggaagactttggttctaatgtgaaaagactcatg
gtggcttatgatgatcatcaacagcttttaaaagagcaggagtcatctaaaagaaaggca
gaaaatgggtcagaagagccagaggagaaaaaacaaaggagtgatgcaacattaacgtct
gcccagctgatgagtggagacttgcaggctaatcagtctgcgtataattacaatgcttgg
tatcagtacaattatgcaacaccctggaactacgggcagtattacccaccacctacataa
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