Rhincodon typus (whale shark): 109929131
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Entry
109929131 CDS
T06055
Name
(RefSeq) transcription factor SOX-13 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109929131
Transcription factors [BR:
rtp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109929131
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Trehalose_PPase
Motif
Other DBs
NCBI-GeneID:
109929131
NCBI-ProteinID:
XP_048467846
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All DBs
Position
25:complement(9617393..9786751)
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AA seq
648 aa
AA seq
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MSTQQLASCMEVNGDVIMVHDQVKVEEVEEERSGYGSLSMSFPSNPHSDGLQSKAAPGRE
NSDFERSGVVKPTRASSSPRDEGQQDHSKFTNALSNLERIDFSKNLTEVMPNIEKLLSND
WKDKLLEKCSLSSKDIKGTAESLAEKELQLLVMINQLSSLREQLLTAHAEQKNMAAMLFE
KQQQQMELARQQQDQIARQQQQLIQQQHKINLLQQQIQQVNLPFVMIPAFPHSPQPLPVT
SDPQLGLQMQPGLSCKPSDYGLQLMPTPPAARGTPGLSPAHTHVSPEEASQPLNLTAKTK
GTDMSKSPSPPQAKLRRGPSPSSFVIPAELQSSTPTSLLTREMISKEVFWRNHWGYPIEQ
DVIGKVMQSPKQIFLGKSRSVDGPAVNNSRKDKDLRVTESPLVKQGDDGKAASGNEDFNS
CNDSEGNLTLSGSKGYEARGGNNHEHIKRPMNAFMVWAKDERRKILQTYPDMHNSSISKI
LGSRWKSMSNVEKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCIVDGKRLRVGEYKALM
KYRRQEVQQCYSAGQQDQVHLHPSDVMYPGQIGMTSIPVQPAVSEHYRSCSPDPNMPVIL
NTRSLKSEQADMKETHLNDANGEMYEYGEEDDSDVEYRSDGELVVLAD
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacagcagctggcttcttgtatggaagtgaatggagacgtgatcatggtccat
gaccaggtgaaagtggaggaggtagaggaggagcggagtggttatggatccctcagcatg
tcatttcccagcaaccctcactccgatgggcttcagagcaaggcagcgcccgggagagag
aactctgacttcgaaaggtcaggggtcgtgaagccaacgcgggcttcatcctcaccaagg
gacgaggggcaacaggatcacagtaaattcacaaatgcattaagcaacttggaacgaata
gatttcagtaagaatttaactgaagtcatgccgaatattgagaagttgctgtccaatgat
tggaaagacaagctgctggagaaatgctccttgagtagcaaggatatcaaaggaacggcg
gagagtctggcagagaaggagttgcagctgttggtgatgataaaccagctgtccagtctc
cgagagcaactgctgacagctcacgcagaacagaagaacatggcggccatgttgtttgag
aaacagcagcaacagatggaactggctcgacaacaacaggaccagatagccaggcagcaa
cagcaactcattcaacaacaacacaaaattaacctcctgcaacagcagatccagcaagtc
aacctgccttttgtgatgattccagcatttccccacagtccacagcctcttccagtcacc
agtgatccccagctgggtcttcaaatgcagccaggactgtcatgcaagccaagtgactat
ggactacagctgatgccaacccccccagcagccaggggaactccaggattaagccctgcc
catacacacgtgagtccagaggaagcctctcagccattgaatttgacagcgaaaactaaa
ggtacagacatgtcaaaatccccctcacctccccaggccaaactcagaagaggaccctcg
ccatccagctttgtgatcccagcagagttacagtccagcacaccgacatccttgttaacc
agagaaatgataagtaaagaagttttctggaggaatcactggggttatcccattgagcag
gacgtcatcgggaaggtcatgcagagtccaaagcagatctttcttgggaagagtcggtct
gtggatggtccagctgtaaataatagcaggaaggacaaggatttgagagttacagagtca
cctctcgtgaaacagggagatgatgggaaagcagcaagtgggaatgaagattttaacagc
tgcaatgactcggaaggaaacctgactctgtcagggtcaaaaggctacgaggcgagaggc
ggcaacaaccatgagcacatcaagcgaccaatgaatgcattcatggtatgggccaaggat
gagcgaaggaagattcttcagacgtacccagacatgcacaactccagcatcagcaagatt
ttggggtcccgttggaaatcaatgtcaaacgttgagaagcagccatactatgaggagcaa
gcaaggttgagtcgacaacacctggagaaatatccagattacaagtacaagccaaggccc
aaaaggacctgcatcgtggatgggaagaggctgagggttggggaatacaaggcattgatg
aagtacagaaggcaggaggtgcagcaatgttactctgcagggcaacaggaccaagtccac
ttgcacccatcagacgtgatgtaccctgggcagattgggatgacgtccattcctgtccag
ccggcagtgtcggaacactatcgatcctgcagccccgatcccaacatgcccgtcatcctc
aacacacggagtctgaaatctgaacaggcagacatgaaggaaacgcacctaaacgacgcc
aacggtgaaatgtacgagtacggtgaagaggatgactctgatgttgaatatcgcagcgat
ggtgagctggtggtcctcgcggactag
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