Rhincodon typus (whale shark): 109929135
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Entry
109929135 CDS
T06055
Symbol
hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtp03036
]
109929135 (hfm1)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
109929135 (hfm1)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Meiosis-specific proteins
Others
109929135 (hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
Helicase_C
WHD_SNRNP200
ResIII
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
109929135
NCBI-ProteinID:
XP_048457501
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All DBs
Position
10:complement(66572442..66680365)
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AA seq
1001 aa
AA seq
DB search
MESQSLSRFKTELNRFLEIYDIRDMEVQESVIEKTIIYNLELQGRLDGLIILLLFLKDER
LFKMTMPTKTPNKLATFNCLPFPENSPSQDENCDFRNVAEKHTEYDLKDNTKQNDQNDTR
SLKKAHVLPMMSQALNVQDATGRSSGTLRAVTEIPVQFRNVFKEFPYFNYIQSKALDDLL
YTEKNFVICSPTGSGKTVLFELAIVGLLMQVPKPWSNIKIVYMAPIKTLCNQRNEDWKEK
FGPIGLNCKELTGDTEMDDYFEIQDAHIIITTPEKWDTMTRKWRDNSLVQFVRLFLIDEV
HVVKDECRGATLEVVVSRMKTVQLAVSRMSNQLDDKTLRFVAVSATIPNVEDIAEWLSDG
KGPGIAMKIDESYRPVKLRKIVLGFPCSSTQTEFKFDLSLNYKMASVIQTYSEQKPALVF
CATRKGVQQAASILAKDAKFIMTTDHKQRLQKYTNSIKDSKLRDLLVYGVGYHHAGMDVS
DRKAIEAAFTAGDVPVLFTTSTLAMGVNLPAHLVVIKSTVHYAGGMFQEYSETDILQMMG
RAGRPQFDTTAAVVIMTRTQTKDNYTQMLDGVHTIESSLHKHLVEHLNAEIILNTITDVN
VALEWIRSTFLYIRAFKNPNHYGFATGQGRTGIETKLQELCLKNLHALSSIGLIKMDEEI
NFKPTETGRLMARYCIAFDTMKLFYLVTGSETLNELVRLICNCKEFTDVQLRMNEKKILN
TLNKDKNRVTIRFPLEGKVKTNEMKVNCLIQAQLGCIPVQEFTLTQDTAKIFKCGVRVTK
CLSELLMQQENKSFMALLNAVILAKCFRAKLWDNSTYVSRQLDKIGPTLSNAMVNAGLTT
FQKIEDTNARELELIVNRHPPFGNQIRESVLHLPKYELSVEQLARYHESVAEIIVKITLT
NYQQLREKRTAPDNHHTSLIIGDADNQVVYKRKITDSALLKSGNWMKKIEVKRAFKSEEL
SVHLISSEYDDVWIRTFACHSNSAMFLTQIPSDTCCNIKRD
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggaatctcaatcattgagccgattcaagacagaactcaatagatttctggagatttac
gacattagggatatggaagtacaggaaagtgttattgagaaaacaataatctataatcta
gagttgcaagggaggcttgatgggctgattatcctactcttgttcctaaaagatgaaaga
ttatttaaaatgacaatgccaaccaaaactccaaataaactagcaacttttaattgccta
ccttttcctgagaattccccatcacaagatgaaaactgtgattttagaaatgttgctgaa
aagcacactgagtatgatttgaaagacaataccaaacagaatgatcagaatgacactcgg
tctctgaaaaaagcacatgtacttccaatgatgtcacaagcacttaatgtacaagatgca
actggcaggagttcaggaacattgagggcagttactgaaattcctgtacaattcagaaac
gttttcaaagaatttccttatttcaactacatacagtcgaaagcattagatgatcttctt
tacacagagaagaactttgtgatttgttccccaactggctctggaaagactgtactcttt
gaactggccattgttggattactgatgcaagttccaaagccatggtctaatataaaaatt
gtatacatggctccaatcaaaactttatgtaatcagcgaaatgaagattggaaagaaaag
tttgggcctattggactgaactgtaaagagctaactggagatacagaaatggatgactat
tttgaaattcaagacgcccatattatcataactactcccgaaaaatgggacaccatgacc
agaaaatggagagataattcattagtacaatttgtgaggcttttcctcattgatgaggta
catgttgtgaaagatgaatgtcgtggtgcaactcttgaagttgtagtcagcagaatgaaa
acagttcagttagctgtctcacgtatgtctaatcaactcgatgataaaacattgagattt
gtagcagtttctgcaacaattcctaatgttgaggatattgcagaatggttatcagatgga
aaaggaccaggaattgccatgaagatagatgaaagctatcgaccagtaaagctccgcaaa
attgttcttggatttccttgctccagcactcaaactgaattcaagtttgacttatcgctt
aattacaaaatggctagcgttatccagacatattctgagcagaaacctgctctggtgttt
tgtgctacaaggaaaggtgtgcaacaggctgcatccatacttgcaaaggatgccaaattt
atcatgaccacggaccacaagcaaagattgcaaaaatatacaaactcaataaaggattca
aagcttagagatctgttagtatacggagttggttatcatcacgctggtatggatgtatcc
gataggaaagcgattgaagctgctttcactgcaggagatgtaccagtactttttactact
agcactttagctatgggagtaaacttgccagcccacttagtggtaattaaatccacagtg
cattacgcaggaggaatgtttcaagaatacagtgaaactgatatacttcaaatgatgggc
cgagctggtcgacctcagtttgacacaacagccgcggtagttatcatgacaaggacccaa
acaaaggacaactacacacagatgttagatggagtacatacaattgagagcagtttacac
aagcatcttgttgaacatttgaatgcagagattatactgaatacaatcactgatgtcaat
gttgctttggagtggatacgatcaacatttctttacataagagcttttaaaaatccaaac
cactatggttttgcgactggacaaggtagaactggaattgaaaccaaattacaagaatta
tgcttgaagaatttacatgcattgtcttctattggtttgataaagatggatgaagagatc
aatttcaagcctacagaaactggaagactaatggctcgttattgcattgctttcgataca
atgaaacttttctacttggtcactggaagtgaaactttaaatgaactggtaagattgatc
tgcaactgcaaggaatttactgatgttcaactcagaatgaatgagaagaagattcttaac
acactgaataaagacaagaatagagttaccatcaggttccctttagaaggaaaagtaaaa
acaaatgaaatgaaagtgaattgcctaattcaagcccaactaggatgtattccagttcaa
gaatttacattaactcaagatacagccaagatttttaagtgtggtgtgagagttacaaaa
tgcctttcggaattgcttatgcaacaagaaaataagagctttatggcactattgaacgca
gtgatcttagccaaatgttttagggctaaactttgggacaactctacatatgtctccaga
caacttgacaaaattggtcctactttgtccaatgctatggtaaatgcaggccttactaca
ttccagaagatagaagacacaaatgcaagagaattagagctgattgtaaacagacaccct
ccttttggaaaccaaataagagaatctgttcttcatctcccaaagtatgagctcagtgtt
gaacagcttgcaagataccatgaatcagtggcagaaattattgtgaaaatcaccttaaca
aattatcaacagctacgggaaaagagaacagcacctgacaatcaccacacttccctaatc
atcggagatgcagacaaccaagttgtctataaacgaaaaatcacggattcggccctgctg
aaatcaggaaactggatgaagaaaattgaagttaaaagggcctttaaaagtgaagaatta
agtgttcatcttataagttctgaatatgatgatgtttggatcaggacttttgcttgtcat
tctaactctgctatgttcctaacccagattcccagtgatacatgctgcaacataaaaaga
gattag
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