Rhincodon typus (whale shark): 109929138
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Entry
109929138 CDS
T06055
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109929138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109929138
03016 Transfer RNA biogenesis [BR:
rtp03016
]
109929138
Enzymes [BR:
rtp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
109929138
Messenger RNA biogenesis [BR:
rtp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
109929138
Transfer RNA biogenesis [BR:
rtp03016
]
Prokaryotic type
tRNA degradation factors
109929138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
109929138
NCBI-ProteinID:
XP_020384527
LinkDB
All DBs
Position
9:42335150..42393847
Genome browser
AA seq
800 aa
AA seq
DB search
MAAPCAVDMKLVMFRGICRFLPERASALGTPFVWKLGTGAGWQPVRRTHQQLWASNAVRG
RVSVDQGSSRKLEISTGKLARFADGCALVQLGETSVMVTAVSKTKPTASQFMPLVVDYRQ
KAAAAGRIPTTYLRREMGYTDNEILTSRIIDRSIRPLFPSGYFYDTQIVCNLIAVDGVND
PDVLAINGASAALALSDIPWNGPIGAVRVGLVDGEVVINPTRKEMALSTLNMILAGGPQN
RVVMMDAAAENVLQQDFCHAVKMGVKHTQQIILAIQQLAKEHGNPKRTPQKIFAPPAEIV
EYARQLASEKVCGVFSDFTHDKVSRDDAINKIRLETEEQLRDKFSEAEPFEIMEAFNVVS
KDVFRNIVMNEYVRCDGRDLRSLRNINCEVDMYKPLHGSALFQRGQTQVLCTVAFDSIES
SIKTDLITTLISGVKEKNFMLHYEFPPYATNEIGKIVGQNRRELGHGALAEKALKPVVPK
EFPFTIRVTAEVLESNGSSSMASVCAGSMALMDAGVPISAPVAGVAVGLITKNNPEKPAE
IEDYRLLTDILGIEDYNGDMDFKMAGTSKGITALQADIKIAGLPLKIIMEAVQQASAAKK
EILTLMNKAIPKPREKRKENGPVLETVVVPVSKRARFVGPGGYNLRKLQAETGVTISQVD
EETFSVFAPTPSAMHEATEFISELCKDDQEQQLEFGAVYTATITEIRDIGVMVKLYPNMT
AVLLHNSQLDHRRIKHPSAIGLEVGQQIQVKYFGRDPTDGRMRLSRKVLQSPVATVVKNL
SDKNSIVMGARESSASSASS
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccctgtgccgtggacatgaagttggtgatgttccgcggaatctgcaggttt
ttaccggagagagcgtccgcgcttgggactccgttcgtgtggaagttgggtacgggagcg
ggatggcagccggtgagacgaactcatcaacagctatgggccagcaacgccgtccggggc
cgagtctcggtggatcagggcagcagcagaaagcttgaaatctctacagggaagcttgcc
aggtttgcagatggatgtgctttggttcagttaggagagacatcagtgatggttacagct
gtcagcaaaacaaagcctactgcatctcagtttatgccattggtggtcgattaccgtcag
aaagctgctgctgctggaagaataccaacaacctatttacgtagagaaatgggctacaca
gataatgagattttaactagcagaataattgaccgttcaatcagaccactatttccttca
ggctatttttatgacacgcagattgtttgtaatctcatcgcagtggatggtgtcaatgac
cctgatgtacttgcaataaatggagcctctgcagccttggcattgtctgacataccatgg
aatggccctataggtgctgtaagggttggccttgtagatggagaagttgtaattaaccca
actcgaaaagagatggctttaagtactttaaacatgatactggctggtggacctcagaac
cgagttgtcatgatggatgcagcagcagagaatgtgttgcaacaggatttctgtcacgct
gtcaaaatgggtgtcaaacacacacaacaaatcatattggccattcaacagctagctaaa
gaacacggaaatcccaaaaggacacctcaaaagatatttgctcctcctgcagaaatagtg
gaatatgcaaggcaacttgcttctgagaaggtctgtggtgtattttcagatttcactcat
gacaaagtttcaagagatgacgccattaataaaatcagacttgagacagaggaacagtta
agagataaattttctgaagctgaaccatttgaaataatggaagcatttaatgtagtttct
aaagacgtttttcgaaatattgttatgaatgaatatgtaagatgtgatggtagagacttg
agatctcttagaaacataaattgcgaagttgacatgtataagcctcttcatggatctgca
ctgtttcaaaggggacagacacaggtactttgtacagtagcctttgattccatagaatca
agtataaaaacagatcttatcaccactcttataagtggagtgaaggaaaaaaatttcatg
ctgcactatgagtttccgccatatgcaacaaatgaaattgggaaaatagttggtcagaat
aggagggaactaggccatggtgctcttgcagaaaaagcattgaaacctgtggttcctaaa
gaatttccatttacaataagagtaactgcagaagtattggaatctaatggttcatcttct
atggcatctgtatgtgcaggaagtatggctttgatggatgcaggtgttccaatttcggct
cctgtggcgggtgtagctgttggcctcatcacaaagaacaatccagaaaagcctgctgaa
atcgaagattaccgtctcctgactgatattttgggtattgaggattataatggagatatg
gactttaagatggcaggaacaagcaaaggaataacagctttacaggcagacattaaaata
gcaggactgccgttgaagattataatggaagctgtccagcaagcttcagctgccaagaag
gagatcttgactctaatgaataaagcaattcctaaacccagagaaaaaaggaaagaaaat
ggacctgttctagaaactgtagtggtgccggtgtctaaaagagctagatttgttggtcca
ggtggttacaacctaaggaaacttcaggctgaaactggggtaacaatatctcaggtagat
gaagaaacattctcagtatttgctccaactccaagtgctatgcatgaagctactgagttc
ataagtgagctctgcaaggatgatcaagaacaacaacttgagtttggtgccgtttacact
gccactataactgaaatacgggatattggagttatggtgaagctttatcccaatatgact
gcggttttactgcataattcacaacttgaccacagaaggataaaacatccaagtgccatt
ggactggaagttggacaacagattcaggtgaagtattttggtcgtgatcccacggatgga
aggatgaggctttctcgcaaagtgctgcagtctccagttgcaacggtagtcaagaacttg
agtgacaaaaatagtattgtgatgggagcaagagagtcttcagcatctagtgcttcctct
tga
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