Rhincodon typus (whale shark): 109929412
Help
Entry
109929412 CDS
T06055
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109929412 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109929412 (mtrex)
03041 Spliceosome [BR:
rtp03041
]
109929412 (mtrex)
03009 Ribosome biogenesis [BR:
rtp03009
]
109929412 (mtrex)
03016 Transfer RNA biogenesis [BR:
rtp03016
]
109929412 (mtrex)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109929412 (mtrex)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109929412 (mtrex)
Spliceosome [BR:
rtp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109929412 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
109929412 (mtrex)
Ribosome biogenesis [BR:
rtp03009
]
Eukaryotic type
Pre-60S particles
Helicases
109929412 (mtrex)
Transfer RNA biogenesis [BR:
rtp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109929412 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
MTR4-like_stalk
Helicase_C
THOC7
Noggin
Motif
Other DBs
NCBI-GeneID:
109929412
NCBI-ProteinID:
XP_048453019
LinkDB
All DBs
Position
1:60305166..60378588
Genome browser
AA seq
648 aa
AA seq
DB search
MEQITDKKVTYIRNNYFPSDDEKKLVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGI
HHGGLLPILKETIEILFSEGLLKALFATETFAMGINMPARTVLFTSARKFDGKDFRWISS
GEYIQMSGRAGRRGMDERGIVILMVDEKMSPTVGKQLLKGSADPLNSAFHLTYNMVLNLL
RVEEINPEYMLEKSFYQFQNYKAIPGVVEKVKVLEGQYNEIEIPNEENVVTYYKIRQQLA
KLGKEIEEYVHKPKYCLPFLQPGRLVKVKNDDDDFGWGVVINFNKKSNVKPNTGELDPLY
VVEVLLLCNKDSVKLAASGTAKPAKPGEKGEMQVVPILLHLITAISSVRLYIPKDLRPLD
NRQSVLKSIQEVQKRFPDGIPLLDPIDDMGIKDQGLKKVIQKIEAFEHRMYSHSMHNDSN
LETVYRLCERKAQIAGEIKAAKRELKKARTVLQMDELKCRKRVIRRLGFATSSDVIEMKG
RVACEISSADELLLTEMMFNGIFNDLAAEQATALLSCFVFQEKANEMPKLTEQLAGPLRQ
MQECARRIAKVSAEAKLEVDEEMYLDSFRPHLMDVVFTWANGATFAQICKMTEVFEGSII
RCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggagcagattacagacaaaaaagttacgtatattagaaataattatttcccctcagat
gatgaaaagaaactcgtggaagaggttttcaacaatgctattgactgcttgtctgatgaa
gataaaaaacttcctcaggtcgaacatgtgctacctcttttaaaacgaggaattggaatt
caccatggtggtttgcttcctattttgaaagagaccattgaaattctcttctctgaagga
ctcctgaaggcattattcgcaacagagacctttgctatgggcatcaacatgcctgcaagg
acagttttgttcaccagtgcccgcaaatttgatgggaaagatttccgttggatctcttca
ggggaatacattcaaatgtcaggtcgagctggaagacgtggcatggatgaaagaggaatt
gttattcttatggtagacgaaaagatgagtccaacagttggaaaacaacttctgaagggc
tcagccgatccccttaatagtgcatttcatctgacctataacatggttttaaaccttctt
cgtgttgaagagatcaatcctgaatacatgttggaaaaatccttctaccaattccagaat
tacaaggcaatcccaggggtggtggaaaaagtgaaggtattggaaggacaatacaacgaa
attgaaattcccaatgaagaaaatgtcgttacttactacaaaataaggcagcagctggct
aaactgggtaaagaaattgaggagtatgtacacaaaccaaaatactgcttgccatttctt
cagccaggcagactcgttaaggtgaaaaatgatgacgatgattttggttggggagttgtt
ataaatttcaataagaaatctaatgtgaagcctaacactggagaattggaccccttgtat
gtggtggaggttttgttgctttgcaataaagacagtgtaaaacttgcagcatcaggaaca
gctaaaccagctaaaccaggggagaaaggagagatgcaggttgttcccatcctacttcat
ttaattacagccatcagtagtgtgcgtctatatattccaaaagatctgagaccactagac
aacaggcaaagtgttttgaaatcgatacaggaagtacaaaagagatttcctgatggcata
cctttacttgatccaattgatgacatgggaatcaaggatcagggactgaagaaagtaata
cagaaaatagaggcttttgagcacagaatgtattcacattctatgcataatgactcaaat
ttggaaactgtctacagactttgtgagagaaaagctcagattgctggagaaatcaaagca
gcgaagcgagagctgaagaaagctcgaacagttttgcagatggatgaactgaaatgccgt
aaacgagtgatcagacgattaggctttgctacttcatctgatgtaattgaaatgaaagga
cgagttgcttgtgaaataagcagtgcggatgaactacttctgacagaaatgatgtttaat
gggatcttcaacgatctggcagctgagcaggctacagccttactgagttgctttgtattt
caggagaaggcaaatgaaatgcccaaactgacagaacagctagcaggccccttacgacag
atgcaggaatgtgccaggagaatagccaaagtttcagcagaagccaaactggaggtcgat
gaggaaatgtaccttgactcatttcgcccccacttaatggatgttgtgttcacgtgggcg
aatggagctacttttgctcagatctgcaaaatgacagaggtttttgaagggagtataatt
cgctgtatgagacgattggaagaacttcttcggcagatgtgtcaagcagcaaaggccata
ggaaacacagaactggaaaataaatttgcagaaggcattaccaagatcaaaagagatatt
gtgtttgctgcaagtctttacttgtaa
DBGET
integrated database retrieval system
