Rhincodon typus (whale shark): 109929629
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Entry
109929629 CDS
T06055
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtp04121
]
109929629 (pdzrn4)
Enzymes [BR:
rtp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109929629 (pdzrn4)
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
109929629 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
Sina_ZnF
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-TRAF
GRASP55_65
zf-rbx1
Prok-RING_4
PDZ_Tricorn
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
109929629
NCBI-ProteinID:
XP_048463726
LinkDB
All DBs
Position
18:8595971..9030508
Genome browser
AA seq
1069 aa
AA seq
DB search
MGFELDRFNEEVDPDLKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQKGMCPVQCQRMS
TKELNHVLALRNLISKLDIKCDYRSRGCGKVVSLQKLAEHVEMCDYSPARCRHQGCQEVL
SLKDMDFHMRESCECRPVGICEQGCGLVLLHRDVTPSGDTHCCVAALRARSGSLQRRAAG
LARELKKQAVRAGHREQALLAQVSALQSEVQLTALRYQKKFNQYMAHISSISKNIAACCK
ENGETKSLTIVLHRENDTLGFNIIGGRPNLESEEDSPSEGIYVSKVMEKGPADRADGLEV
HDRIIEVNGKDLSKATHEEAVEAFRNAKDPIVVQVLRRAPLAKNHGSSQEVPLVDTGTQT
EITFEHIMALSKLRSSSPPVPDICPYLLSDSCHSLHPMAHDYYEASDYLPNLAHDGDRAD
ELEYEEVELRRISSQEKLGLTVCYRTDDDEDDSGIYVSEVDPNSIAAKDGRIREGDRIVQ
INGKDVQDREEAVALLSSEESRNILLLVARPEIQLDEGWLDDDRNEFLDELHMDMLEQQH
NQAMQYTATTLEQKKHEEDGGTTDTATTSSNNHEKDSGLGRTDDSVRNDESSEQEILGEE
QNSALLQSQGDLGYSQDTLGSSELQCNESFVSGEYNDSDFVGTQDEECERFKELLELKCK
MSNRSQFDLYYSTSTIQCGRRQQEVVDRELEMLNEELRNIELECQNIMQAHQLQTVREEY
GDVWSIHGSGFGNYNTSIDTPRGKKLADIMEHPEKSDKDSSSAYNTAESCRSTPLTVDRS
PDGSLQRIVSITNKRNLRSSIEAAAALPSPSSPRRISADAASPAASSSSETPETAVPGDD
TEHVTEGSKSGEGGERVPYLSAYHSSPYRHVNIPAHARHYQSYMQLIQQKSAVEYANSQL
SLVSMCKDAHHKAGAGDSKAEWKVKVRSDGTRYITKRPVRDRLLKERALKIKEERCGMTT
DDDAVSEMKTGRYWSKEERKQHVVRAKEQRRRREFMMRSRLECLRENPQSGSEGKKEVNI
IELSHRKMMRKRNKKIFDNWMTIQELMTHGAKSPDGTRIYNSFLSVTTV
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagttggatcgttttaacgaggaggtggaccctgacctgaagtgcaacctg
tgcaacaaggtcctggaggatcccttgaccacaccgtgcggtcatgtcttctgtgcgggt
tgtgtgctgccctgggtcgtgcagaaaggcatgtgccccgtccagtgccagaggatgtcc
accaaggaactgaaccacgtcctggctctgcgtaacctcatctccaagctggacattaag
tgtgattaccggtcccggggctgcgggaaggtggtgagcttacagaagctggccgagcat
gtggagatgtgtgactacagcccggctcggtgccggcaccagggctgccaggaggttctc
agcctgaaggacatggacttccacatgagggagagctgcgaatgccgcccggtggggatc
tgcgagcaaggttgcgggctggtgttgctgcaccgggatgtgacaccgtccggagacact
cactgctgtgtggctgctctccgcgcccggtctggatcgctgcagcggcgggccgccggc
ttggcccgggagctcaagaagcaggcggtccgggccggccaccgggagcaggcgctgctc
gcacaggtctcggcgctgcagagcgaggtgcagctcaccgcgctccgctaccagaagaaa
ttcaaccagtacatggcgcacatcagcagcatcagcaagaacatcgccgcctgctgcaag
gaaaatggtgaaacaaaatcgttaactatagtgctacatcgagaaaatgacactcttgga
tttaacattattggcggcagacccaatctggaaagtgaggaggattctccaagtgaagga
atttatgtttccaaagttatggagaaagggcctgctgacagagcagacgggctggaagtt
catgacaggatcattgaggtcaacgggaaggatctctcaaaagccacacatgaggaggca
gtggaagctttccgaaatgccaaggacccaattgtcgtgcaagttctgcggagggccccc
cttgcaaagaatcatggcagttctcaggaagtcccactcgtggatactggcacacagaca
gaaattacttttgagcacatcatggccctctccaagttgaggtcgtcttcgcctccagta
cctgatatctgcccgtatttgttatcagacagctgtcactctctccatcccatggcccac
gactactacgaagccagcgattaccttcccaacctggcacacgacggggatcgagctgac
gagctggagtacgaggaggttgagctgcgccgcatcagcagccaggagaagctgggcctg
actgtctgttacagaacagacgacgacgaggatgacagtggcatctatgtgagcgaggtc
gacccgaacagcattgcggccaaagatgggcgtatcagagagggcgatcggattgttcag
ataaatgggaaggacgttcaagatcgggaggaggccgtggctttactgtccagcgaggaa
agcaggaacattctgttgctggtcgccagaccagagattcagttggatgaaggatggctt
gatgatgaccgcaatgaatttcttgatgagcttcatatggatatgttggaacagcaacat
aatcaggcaatgcagtacacagctaccactcttgagcagaaaaaacacgaagaagacggt
gggacgaccgataccgcgactacttcttcgaacaaccacgagaaggacagtgggctcggc
cgcacagacgacagcgtgaggaacgacgagagttcagagcaagagatcctcggcgaggag
cagaacagcgccttgctgcaaagccagggggacctgggctacagccaggacaccctgggc
agcagcgagcttcagtgcaacgagagcttcgtctcgggggagtacaacgactcggatttt
gtgggcacccaggacgaagaatgcgagcggttcaaggagctcctggagctcaagtgcaag
atgagcaaccgcagccagtttgacctgtactattccaccagcacgatacagtgcggccgg
aggcagcaggaggtggtggaccgagagctggagatgctcaatgaggagctgaggaacatc
gagctggagtgccagaacatcatgcaggcccaccagctgcagacggtgagggaggagtac
ggcgacgtgtggtcaatccacggcagcggattcgggaactacaacaccagcatcgacacg
ccgcggggcaagaagctggccgacatcatggagcacccggagaagtcggacaaggacagc
tcgagcgcctacaacacggcggagagctgccgcagcaccccgctgaccgtggaccgctcg
cccgacggctcgctgcagcgcatcgtcagcatcaccaacaagcggaacctgaggagctcc
atcgaggccgcggccgctctgccctcgccttcgtcccccaggcggatcagtgccgacgcc
gccagccccgccgccagcagctcctcggagacgccggaaacggccgtgcccggtgacgac
accgagcacgtgacggaggggagcaaatccggcgaggggggtgagcgcgtgccctacctg
tcggcctatcacagctcgccctaccgccatgtcaacatccccgcgcacgcgcgccactac
cagagctacatgcagctcatccagcagaagtcggcagtggagtacgccaatagccagctg
agcctggtgagcatgtgcaaggacgctcaccacaaggccggcgccggcgactccaaggcc
gagtggaaggtcaaggtccgcagcgacggcacccgctacatcaccaagcgcccggtgcgc
gaccgcctgctcaaggagcgcgccctgaagatcaaggaggagcgctgcggcatgaccacc
gacgacgacgccgtgagcgagatgaagacaggccgctactggagtaaggaggagcgcaag
cagcacgtggtgcgggccaaggagcagcggcggcgccgggagttcatgatgcgcagccgc
ctggagtgcctcagggagaacccccagagcggcagcgagggcaaaaaggaggtcaacatt
atcgaactgagccacagaaaaatgatgaggaagcgcaacaagaagatctttgacaactgg
atgacaatccaagaactcatgacacacggtgccaagtccccagatggcacgagaatctac
aattccttcctgtcggttactactgtgtga
DBGET
integrated database retrieval system
