Rhincodon typus (whale shark): 109929695
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Entry
109929695 CDS
T06055
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03013
Nucleocytoplasmic transport
rtp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109929695
03015 mRNA surveillance pathway
109929695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109929695
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109929695
mRNA cycle factors
P-body specific factors
109929695
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Motif
Other DBs
NCBI-GeneID:
109929695
NCBI-ProteinID:
XP_048465967
LinkDB
All DBs
Position
22:complement(45479649..45538230)
Genome browser
AA seq
1049 aa
AA seq
DB search
MEEKDVAVFSNENRSSKDKESTDRRPISSREKGRDELKASSRRETIKAAEEKKKRQDDEK
RKKEDEKRKKKEEEKLKAEEEQRKKEEEEKRKLEEEERKKQEEEEKRQREEAATRQREME
EAYQLHQEAWERHQTRLELRSKNQIAHENRPEESFFTRLDSSLKKNTAFVKKLRTITEQQ
RDSLSSDFNMLNLSKYIAEAVASIVEAKLKLSDVNCAVHLCCLFHLRYADFSPLLLQGWR
KHFEARKEEKTPNISKLRTDMRFIAELTICGIFTDKEGLSLIYEQLKNIICADRDTHTHV
SVIISFCRHCGDDVAGLVTRKMKFASEKHNLSFPPSEIISSEKQQPFMNLLREYFTSLTK
HLKKDHRELQNLERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADLLDENMP
ELPQDKTAQEEHGTGIDIFTPGKPGEYDLDGGIWEDEDARNFYENLIDLKAFVPAILFKD
NEKNSQNKDSSKEDSKDSKDGRESKDGKDSKDLVATEELELELENLDINDEMLDEEGTEE
TEDLSQKLLEEHEQDEEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKA
NRRKLVRALFTVPRQRLDLLPFYARLVGTLYPCMTDVAEDLCAMLKGDFRFHVRKKDQIN
IETKNKTVRFIGELTKFKMFLKSDSLHCLKMLLADFSHHHIEMACTLLETTGRFLFRSPD
SHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPVEKTVRKKRPPLQEYIRKLL
YKDLSKVTTEKVLRQMRKLAWHDPEVKEYVINCMINIWNVKYNSIHCVANLLAGLVPYQE
DVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSVKFLGELYNYRMVESAVIFRILYSFITF
GISADGSATPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLVYFQRYIWWKKSL
DVWTKDHPFPIDVDYMISDILELLRPKMKFCGSLEEAIKQVQELEREFLIKLGKERFYLY
HSEEESCQDPTPRSEYLNSYAATASDACV
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaaggatgttgcagttttcagcaatgagaacagaagcagtaaagacaaggaa
tctactgacaggaggcccatctccagtagagagaaaggccgggatgaacttaaagccagc
agcagaagggaaaccataaaggcagccgaggagaaaaagaagaggcaagacgatgaaaaa
cgcaaaaaggaggatgaaaaacgaaagaaaaaggaagaggagaagttaaaagcagaggaa
gaacaaaggaagaaagaagaggaagaaaagaggaaactagaggaggaagaaaggaagaaa
caggaggaggaggaaaaaaggcagagagaagaagcagcaaccaggcagagagagatggaa
gaagcgtatcagttgcatcaagaggcctgggagcgtcatcaaacaagattagaactccgt
agtaagaatcagatagcgcatgagaaccgtccagaggagagtttctttaccaggctggac
tcaagcctaaagaaaaatacagcatttgtcaagaagctcagaactattactgagcagcaa
agagactccctttccagtgatttcaacatgcttaacttgagcaagtacattgcggaagct
gttgcgtccattgtagaagccaaactgaaattatctgatgtgaattgtgctgttcacctt
tgctgcctgtttcacttgcgttatgctgacttttcaccattgcttctacaaggctggaga
aagcactttgaagccaggaaggaagaaaaaactccaaacattagcaaactgaggactgac
atgcgcttcattgcagaactgacgatttgtggaatcttcactgacaaagaaggcctgtca
ctcatctacgagcagctgaagaatatcatttgtgctgatcgtgatactcacactcacgtc
tctgtgattatcagcttttgccggcattgtggagatgatgtggctggtctggtcaccaga
aagatgaagtttgcctccgagaaacacaacctcagcttccctcccagtgagatcatcagt
tctgaaaagcagcagcccttcatgaatctgttgagggagtactttacctctctgaccaaa
catcttaaaaaagatcaccgtgaattacagaatctggagaggcagaacaggcgaattttg
cattctaaaggagaactgagtgaagatcggcacaagcagtatgaagaatttgctacctcc
taccagaagcttttggcaaacacacagagcctggctgatttgttggatgagaacatgcct
gaacttccccaggataaaactgcgcaggaagaacatggcactggcatagacattttcaca
ccagggaagcccggagaatatgaccttgatggaggaatctgggaagatgaagatgcacgc
aacttctatgaaaacctaattgacctgaaagcatttgtacctgctatattgttcaaagat
aacgagaagaactcgcagaacaaagattcgagcaaagaagattcaaaagattccaaagat
ggcagagagtccaaggatgggaaagattccaaagatttggttgcaacagaagaattggaa
ctggaactagagaatctggacattaatgatgaaatgttagacgaagaaggaacagaagaa
acagaagacctcagtcaaaaactcctagaggaacacgaacaagatgaagaagaagccagc
actggttctcatctgaaactgatagtggatgctttcctgcagcagctgcctaactgtgtc
aaccgtgacctgatagacaaggctgcaatggacttctgcatgaacatgaacacgaaagct
aatcgaaggaagttagtccgagcactgttcactgtgcccaggcagaggttggacctactt
ccattttacgcccgtctggttggcactttatatccatgtatgacagatgtggcagaagac
ctttgtgccatgttaaaaggagacttcagattccatgtcaggaagaaggatcagatcaac
attgaaactaaaaacaaaactgtacgtttcataggagaattaacaaagtttaaaatgttc
ttgaagagcgattcacttcattgtctaaagatgcttttggctgacttttcccaccaccat
attgaaatggcctgcacactcctagagacaactggtcgttttcttttccgatcacctgat
tcccatttgaggacaagtgttcttctggagcagatgatgcgcaagaaacaagcaatgcat
ttagatgctcgttatgttacaatggtggaaaatgcatactattactgtaatccaccacct
gtggagaaaacagtgaggaagaagcgccctccccttcaagaatatatccgcaaacttctc
tacaaggacttgtccaaggtcacaactgaaaaggtgttgagacagatgcggaaattggca
tggcatgatccagaggtgaaggaatatgttattaactgcatgatcaacatctggaacgtc
aaatataacagtattcactgtgtcgctaacctattggcgggtttagtgccataccaagaa
gatgtgggaatacatgttgtggatggagtgctggaagacatccgtctgggaatggaggtc
aatcaacccaaattcaaccagaggcgtattagcagtgttaagttccttggggaattgtac
aattacaggatggtggagtctgcagtcatcttccgaattttgtattcctttattacattt
ggtataagtgctgatggcagtgcaacacctctggatccaccagagcatttgttccgtatt
cgtctggtttgcactctgctagacacttgtggacaatactttgacagaggctccagcaaa
cggaagttggactgttttcttgtatattttcagcgttacatctggtggaagaagagttta
gatgtgtggacgaaagatcacccgttccctattgatgttgactacatgattagtgacata
cttgagctgcttcgaccaaagatgaaattctgtggctcccttgaagaggccataaagcaa
gttcaggaactcgagcgtgagttcttgattaaactaggtaaggaacggttctacttgtat
cattctgaagaagagtcctgccaggaccccacaccccgctcagaatatctcaattcctat
gctgccactgccagtgatgcctgcgtctga
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integrated database retrieval system
