Rhincodon typus (whale shark): 109929703
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Entry
109929703 CDS
T06055
Symbol
nedd1
Name
(RefSeq) protein NEDD1 isoform X1
KO
K16547
protein NEDD1
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtp03036
]
109929703 (nedd1)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
rtp04812
]
109929703 (nedd1)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Centrosome formation proteins
Pericentriolar materials (PCM)
Other PCM proteins
109929703 (nedd1)
Microtubules and associated factors
gamma-tubulin ring complex
109929703 (nedd1)
Cytoskeleton proteins [BR:
rtp04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Gamma-tubulin complex components
109929703 (nedd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_WDR19_1st
EIF3I
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_DCAF12
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_IFT140_1st
WD40_like
FliM
NBCH_WD40
NRBF2
Motif
Other DBs
NCBI-GeneID:
109929703
NCBI-ProteinID:
XP_020384860
LinkDB
All DBs
Position
22:complement(1535552..1580358)
Genome browser
AA seq
690 aa
AA seq
DB search
MQDSIKLASCGDDIKIWDSLSMTVVEQFNPHKKPCEVTSVCWTVDNQCLVSSSSSGDKIV
LSSCRSTPVPIKDLAEGKKQTCLSLNSNSKCIVSGGLDNTVNIWDIKSKRPHRTLKDHRE
EVSSVCFNWNDYYIASGSRSGDIIVHSVTTNISSAPFGHGKSQPVQNLKYSIFKKALLGS
VHDSGAVTLWDVNTQQPYHTFENAHKAPASGLCFSPVNDLLFATVGLDKKINCYDTSSKM
LLRTISVEAPLTAIDFMTDGATLTVGSIRGKIYVYDLRVTTSPLKIVSAHKKSIRCLKFQ
NGSVQFKSNGGKNFASRGSSTLPTAATKRTSTKVNSAPGSDSAKGIQELTALMTSAPAVK
VPPVLEEKVAEANLDVKGLAHSTSLDVIPSKETENARRADNSGNFRNLDCVGRNSFGDVF
SPVRDDVAGLKTNEDSMTKGNGLGFLPQLNTVFSTRSNPVGASTQEESNSNSLQGFGSPS
PIKEQAPQRDMSAILSQLQSAGQDSKEPVGQENKAIGMQKSKIIEHNGQLEAARLDQLHT
SVAECGTLGTPLTSSMVKTPDLCERKGREFQFPQESPVLETSTSGEKMMPTAGILKLSDK
IVDALGSDGIGQQLTSIQIQLIRTMIQETLEDYKDAWHRDIINLQLEMIKQFQIQQNEIH
SLLERYSINEALVAENERLREENKRLRTTF
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatagcatcaaattagcctcatgtggggatgacattaaaatctgggattcgctt
tcaatgacagtggtggaacagtttaaccctcacaagaaaccctgtgaagtaacttccgtt
tgctggactgttgataatcagtgtttggtgagctcatcaagtagtggggacaaaatagtg
ctgtcatcctgcagatccaccccagttcctataaaagatcttgctgaagggaaaaagcag
acatgtctaagtctgaattctaattccaaatgtattgtaagtggaggtcttgataataca
gtcaatatctgggacataaagtcgaagagacctcataggacactgaaggatcacagggaa
gaagtcagtagtgtatgtttcaattggaatgactactatatagcatcgggttctcgcagt
ggtgacattattgtacacagtgttacaactaatatttctagtgctccatttggtcatggt
aaaagtcagccagtacaaaatttaaagtattccatcttcaagaaagctttgttgggaagt
gttcatgacagtggagctgtaactctttgggatgttaatacacaacaaccttaccacacc
tttgaaaatgctcacaaggctccagcttctggactttgcttttcaccagtgaatgatttg
ttatttgccacagttggtttggataaaaagatcaactgctatgacacgtccagcaagatg
ttattgagaactatttctgttgaagccccattgactgcaatagactttatgactgatgga
gcaactttgactgtaggatccatcaggggcaaaatttatgtgtatgatttacgagtgaca
acttcaccgctcaaaattgtcagtgcccacaagaaatccatacggtgcttaaagtttcag
aatggttctgtacagttcaagtctaatggaggtaaaaacttcgcaagcagaggttcatcc
accttgcccaccgcagctaccaagaggacttccactaaggtgaacagtgctccaggtagt
gacagtgcaaagggaatccaggagcttactgcactaatgacatctgcaccagctgtgaaa
gtacctcctgtcctagaagaaaaagtagctgaagctaatctggatgtaaaaggtttagca
catagcaccagtctagatgtaattccatccaaagagacagaaaacgcaagaagagcagat
aacagtggcaattttagaaaccttgattgtgtgggtagaaatagttttggagatgtattc
tcaccagtcagagatgatgttgccggattaaagacaaatgaagacagcatgacgaaagga
aatggtttgggctttttgccacagttgaacactgtattttccacaagaagtaatccggtg
ggcgccagtacacaggaagaatcgaactcaaactccttgcagggatttggatctccatct
cccattaaagaacaggctccacagcgagacatgagtgccatattgagccagctccagagt
gctgggcaagattcaaaagagcccgttggccaggaaaataaagccataggaatgcagaaa
tccaaaataattgagcataacggccaattggaagctgcaagattggatcagttacacaca
tcagttgctgagtgtgggaccttggggacaccactgacatcttccatggtgaaaacacct
gatttatgtgaaagaaaaggaagagaatttcagtttcctcaggaatccccggtgctggag
acctctacatctggtgaaaagatgatgcctactgcaggaattttgaagctgtctgataag
attgtggatgctcttggaagtgatggcattggacagcaattaacatccattcaaatacag
ctaattaggaccatgatacaagaaactttggaggattacaaagatgcatggcatcgagat
atcatcaacctccagctggagatgatcaagcaattccaaatccaacagaatgaaatccat
agtttacttgaacgatattctattaatgaagcattggtggcggaaaatgagagattgcga
gaagagaataaaagactgcgaactacattttaa
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