Rhincodon typus (whale shark): 109930051
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Entry
109930051 CDS
T06055
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109930051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
109930051
Spliceosome [BR:
rtp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109930051
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
109930051
NCBI-ProteinID:
XP_048458014
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All DBs
Position
10:complement(20821407..20837204)
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AA seq
484 aa
AA seq
DB search
MLFAKSFSNVLFFKLQVTHIEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLF
TLKLTRKQVMGLITHTDSPYIRGLGFMYIRYTQPPADLWDWYEPFLDDEEELDVKAGGGC
VMTIGEMIRSFLTKLEWFSTLFPRIPVPVQKNLDQYLKTRPRKIAKKDGKDSMEEPERLS
ERRHSRSPRRSLTPRKSPRRSRSRSRHREGHGSFGFDKELERERERQKREREQIKDRERS
EKDRHKSRSTDRGLDRKRSRSRDHHRSRSRDKRSDKKDRDKEREKENERNRRRDKDYEKD
KERVSDRDRDRNVEKESERSRDRDKRSQSKTEDRKRKEEKREKDEKRHKDDKKDSKKDKR
HSRSRSREKRHRSSSPGRGHVSKRSRSKSKEKSKHRNEHKEKSNKRSISRERTDENNGER
IKKQRSHSKEKAHKRSESKERSHKQSHSDGKDHSSKPSRRSLSTERENKSNVEGLLQGNT
TDND
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgctatttgcgaaatctttttctaatgttttgttttttaaattacaggtcactcatatt
gaaccatgggagaaggggagcaggaagactgcaggccagacaggcatgtgcggaggggta
cggggtgttggaacaggaggcattgtttccactgccttttgtctactgtacaagctgttt
accctgaagttaactcgtaaacaagtgatgggtctaataacacacactgactctccgtac
atccgaggtttaggattcatgtatattcggtacacacagcccccagctgatttgtgggat
tggtatgagccttttttagatgatgaagaggaactagatgtaaaggctggtggaggatgc
gtcatgacaataggagagatgattcgttctttccttactaaactagaatggttttctacc
ctattcccaagaattccagttcctgttcaaaagaatttggaccagtatcttaaaactcga
ccaaggaaaattgccaaaaaggatgggaaggatagtatggaagaaccagagcgcctatca
gagcgtagacattcgagatcaccaagaagatctcttactcctcgcaaatctcctaggcga
tctagaagcagaagccgtcatagagaaggccatggctcttttggttttgataaggaatta
gagagggagagagaacgacagaaaagggaacgagaacagataaaagatagagaacgaagt
gagaaagatagacataaatctagaagcacagacagaggtttagaccgtaagcggagcaga
agcagagaccatcacagaagtcgaagtagagataaaagaagtgataaaaaagatagagat
aaagagagggagaaggaaaatgaaagaaatagaaggcgagataaagattatgaaaaggac
aaagaaagagtgagtgatcgagacagggacagaaatgttgagaaagaatctgagagatct
agagaccgggataaaagaagccaatcaaagactgaagacagaaaacgtaaggaagaaaaa
agagaaaaagatgaaaagaggcataaagatgataaaaaggattcaaaaaaagataaaagg
catagtagaagcaggagcagagagaaaagacatagaagcagtagtcctggtaggggtcat
gtcagcaaacgtagtagaagcaaaagcaaagagaaatctaaacatcgaaatgaacataaa
gaaaaatcaaacaaaagaagcattagcagagaaaggactgatgagaataatggtgaacgg
ataaagaaacagcgtagtcatagcaaagagaaagctcacaaacgcagtgaaagtaaagaa
cgatctcacaaacaaagtcacagtgatggtaaggaccattcgagtaaaccaagccgtcga
agtctcagtacagaaagagagaacaaaagtaatgtggaaggattattgcaaggcaatacc
actgacaatgactga
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