Rhincodon typus (whale shark): 109930102
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Entry
109930102 CDS
T06055
Symbol
dcp1b
Name
(RefSeq) mRNA-decapping enzyme 1B isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109930102 (dcp1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109930102 (dcp1b)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109930102 (dcp1b)
mRNA degradation factors
5'-3' decay
Decapping complex
109930102 (dcp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
Motif
Other DBs
NCBI-GeneID:
109930102
NCBI-ProteinID:
XP_020385228
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Position
18:complement(20646403..20735264)
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AA seq
609 aa
AA seq
DB search
MAAVSGNRGLDISLAALQRQDPYIFRIVDVASQVALYTFSQRDNEWEKTDVEGTLFIYAR
SASPRHGFTIMNRLNVENRTEPITKDLDLQLQDPFLLYRNAQLSIYGIWFYDEVECQRIA
ELMKNLTQLEQLKAQQEVGSPIASQKEAVDIVQMLFKAEHEYNKIKLSSEPKQMTSSNLI
RNSSNLIKPIPIKLTDFGADTHYQQVQQQNKSTELGTKHLNLAALFGTQEKSTLTNVPDE
TQEFKNKVSSRPAVVRSLSYEEPRKLLETEISQSVKKRFCPAIQKLMSCGVDLHPVSELP
ENHLCEKSTEESLAGLFQSQSSTGNVSLQQNCLDEPNSLFSKGTHKFLQKLQCTRASIPI
SCPPVIHSDLLFSRSQNGSQMQPVSQSQSAYLNSSLQVQSEMHHVPVMDKSKSTVASKGC
SNQIQASVIIPHHELFQKLQIVHQDQQPPTGKMTLAAKFSAQLPPLVNQRHSTIKGFDSQ
TEKSISSEKKNLLIQAISPRRIPATVVPSLLMSPTVFTQALVGKPMIGVEASAILLPQTD
TIMAPKQLHSGLHSPAQMAELTNKKTHVLTKIQLQETLLYLLQNDPNFVNAIYEAYLTGQ
SNTSAEKKT
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggtgtcggggaacagaggtctggatattagcctcgcagccttacaaaggcag
gatccgtatatttttcgtatagtggatgtggctagtcaggtagcgctatacaccttcagt
cagagagacaatgaatgggagaagactgacgtcgaagggaccttatttatttatgcaaga
tctgcttctccaaggcatggcttcaccatcatgaatagacttaatgtggagaacaggact
gaaccaattaccaaggatttggaccttcaattacaagacccttttctactctatagaaat
gcacaattgtcaatctatgggatctggttctatgatgaggtggaatgtcaaagaattgca
gagcttatgaagaacttaactcagctggagcaactgaaggcccagcaagaagttggatca
ccaatcgctagtcaaaaggaagctgtggacattgtgcagatgctgttcaaggctgaacat
gaatataacaagatcaagttgtcctctgagccaaaacagatgactagttctaatttgatt
cgcaatagttcaaatttgatcaagccaattccaattaaattgactgactttggagcagac
actcattaccaacaagtacaacaacagaacaagagcacagaattgggaacaaagcatttg
aatttggcggccttgtttggtacacaagaaaaatctactttaactaatgtgccagacgaa
acacaggaattcaagaataaagtttccagtcgaccagctgttgtacgttctttgtcatat
gaggaacccagaaaactgctagagactgaaatttcccaaagtgtcaaaaaacggttttgt
cctgctattcagaaactaatgagttgtggagttgacctgcatccagtatctgagttacct
gaaaatcatctttgtgaaaaaagtacagaagaatcattagcaggactgttccagtcacaa
tcctcaacaggaaatgtctctttacagcaaaactgcttggatgaacccaattccttattc
tccaaaggtactcacaagttccttcagaagctgcaatgtactcgggcatcaattcccata
tcatgtcctcctgttatacactccgatcttctcttcagcagatctcaaaatggttcccag
atgcagcctgtttcacagtctcagtctgcctatcttaactccagcctacaagtgcaatct
gaaatgcaccatgttccagtaatggacaagtccaagagtactgttgcctcaaaaggttgt
agtaaccaaattcaagcctctgttatcataccccatcatgaattgtttcagaagctgcag
atagttcatcaggatcagcaacctcctactggaaaaatgactcttgcagccaagttttca
gctcagctgccaccgttagtcaatcagcgtcattctacaataaaaggttttgattctcaa
actgaaaaatccatcagttcagaaaaaaaaaacctacttattcaggcaatctccccacgg
cgcattccagctacagttgtaccgtctcttttgatgtcgcccacagtgttcacccaggct
ttggtgggaaagccaatgatcggagtagaagcaagtgccatacttttaccacagacagac
accattatggctcctaaacagctgcacagtggtttgcattcacctgcacagatggcagag
ctgactaataaaaaaacacatgtacttaccaagattcagttacaggaaactcttttgtat
cttttgcagaatgatcccaactttgtgaatgccatttatgaagcttatctcacaggccag
tcaaacacctcagcagagaagaaaacctga
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