Rhincodon typus (whale shark): 109930154
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Entry
109930154 CDS
T06055
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109930154 (cstf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109930154 (cstf1)
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109930154 (cstf1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
CSTF1_dimer
WD40_Gbeta
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_NOL10_N
NBCH_WD40
Beta-prop_VPS8
Beta-prop_TEP1_C
Beta-prop_Aladin
WDR90_beta-prop_4th
ASA1
PAC11
Beta-prop_DCAF4
CFAP251_N
DSE1_N
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
Ge1_WD40
Beta-prop_HPS5
Beta-prop_DCAF12
Cytochrom_D1
DUF7099
Beta-prop_SPT8
Beta-prop_WDR75_2nd
Beta-prop_NWD2_C
eIF2A
UCP007778
Frtz
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
109930154
NCBI-ProteinID:
XP_020385283
LinkDB
All DBs
Position
19:complement(51487327..51525256)
Genome browser
AA seq
431 aa
AA seq
DB search
MFRPKVTLKDRQHLYRLIIGQLLYDGYMNIASNLINEIKPPSVCSPSEQLLHLAKLGMEN
DDNTVQYAIGRSDTVAPGTGIDMEFDADVQTMSPEAAEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSKDYTLKLFDYSKPSAKRAFKYLQEAEMLRSISFHPSGDYILVGTQHPT
LRLYDVNTFQCFVSSNPRDQHTDAVCAVSYNPSANMYVTCSKDGNIKLWDGVSNRCITTY
EKAHDGAEVCSIMFSRNSKYVLSSGKDSIVKLWEISTGRTMVKYTGAGLSGRQTHRTQAV
FNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDYR
ARFWYRRSSTD
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgacctaaagttactctaaaagatcggcagcacctttaccgactcattattggc
cagctgctatatgatggatacatgaacattgcatcaaacctgatcaatgagatcaagcca
ccatcagtttgctctccctccgagcaattattgcatcttgcaaagcttgggatggaaaat
gacgacaacactgttcagtatgctattggacggtcagacactgtggctcctggtacaggc
attgacatggaatttgatgctgatgttcagactatgtccccagaggccgctgagtatgag
acatgctatgtaacatcacacaaagggccatgccgtgttgccacctatagccgggatgga
cagctgattgctacagggtctgctgatgcatctatcaagattctggatacagagaggatg
ttagcaaagagtgccatgcccattgaggtgatgatgaatgagacagcacaacagaatatg
gaaaaccatcctgtaattcgcacgctgtatgatcacgtagatgaggttacctgccttgct
ttccatcccacagaacagatactggcatcaggttcaaaagactacacactgaaacttttt
gactattccaagccttctgccaaaagagcattcaagtaccttcaggaagcagaaatgctc
cgctccatctcctttcacccttccggagactacattctagtgggaacacagcaccccact
ctgcgattgtatgatgtcaataccttccagtgttttgtgtcaagcaatccccgtgatcag
cacacagatgctgtctgtgctgtgagctacaatcccagtgccaacatgtacgtgacatgc
agcaaagatggcaacattaagctgtgggatggggtatcaaatcgctgcatcacaacctat
gaaaaagcacatgatggtgcagaggtgtgctccattatgttctcacgaaattcgaagtat
gttttgtcaagtggaaaggattctattgtgaaactgtgggaaatatcaactggccgtaca
atggttaaatacacaggagcgggattgagtggcagacagacacatcgcacccaggctgtc
tttaaccatactgaagattatgtgcttctccctgatgaaagaacaataagtctttgctgc
tgggactcgcgtacggctgaacgcaagaacctcctgtctcttggacacaacaatattgtt
cgttgtattgtgcactctcctaccaatcctggtttcatgacctgcagtgatgactatagg
gccaggttctggtatagaagatccagcactgattga
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