Rhincodon typus (whale shark): 109930561
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Entry
109930561 CDS
T06055
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12 isoform X1
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtp03036
]
109930561 (tdrd12)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
109930561 (tdrd12)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109930561 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
Helicase_C
ARM_ARMC5
Arm
CS
Motif
Other DBs
NCBI-GeneID:
109930561
NCBI-ProteinID:
XP_048461487
LinkDB
All DBs
Position
15:complement(29822135..29946136)
Genome browser
AA seq
1750 aa
AA seq
DB search
MFEIFIIKVEDPSCFWGRITNGFCDLVENANQYQRLEEKMNQFYNRSHEDLEEIKLPVLE
QGQICAIYCHELRCWCRAILESLVSSGSSYLAECFLVDYAKHILVKAKDVRRAVDAFWKL
PYRAKKFTLFGIQPLTLHIDVCEEKAKIGPAVRWDSAAIQYFQKMSLESEVAEAKLQGVT
GDTFAVQLYLSLNDEKVCLNDDLVAKFFACYVSPKDMVKSPNSASAISSALYQKKEVPAK
KNVGHAALALWSETVQGSALTVLKQGPADQEPVAQCLQSQESISSKSMSKQYSETAVSLS
NRKSTESLATFSLCSLEKELNCKRARFYLHDEMGMDRESSPVMQECDEIPAARRLLQFLN
PDPLNAKSELEFNLQQPSYKMAFDPWNGVLVHSLIKLRPCRSMEMSPISLDLKKELWKKK
IVSPNVVQAYCWPAIGRGCDLIAISQKGDDPLLYLPPLLTFLQLPSVYSYQPRRNLPLAI
IVCPGRQKAHFVCQMLMDLTRTSRPLSLSLVLVGQDPEETKKTKFTKGCDVVVTTPHSLA
RVLQIHCLFFIRLSHLVLDRVDVLFDEAMDEMNTILQCFREATNVPERGSTPQQLIAVGQ
HWSKKMDSLLKENQSDPYVVITVMEEAALYGNVHQIVKVCLDCEKTSFLITMLDFTSEIL
QKTIIFANCAEEVDHVFKALGSNSHFCMKVHEGMSLQVSNTMDEWSKKFNPGTHVILVTT
DNCVKALRITDATCVIHYGFPSSCEIFGTRLCCMVDNFDNLTMEGSTRQGQSIVLLTEKD
VLQTVSILHYLERTEAKIPKELFKFILNMNNPDDICYDRALCKYLKAYGICRDNKTCPSR
HKLHHNADKPRYLTAEKILPATGYIEIIPTCVSDASSCYGRIIHHRNKWEDTPVSMEEDY
LMLLKDMADYYLEDDCRKPVEQLEVSALYGLEEKSYSRVQLIALPKKAESAVLRNARVKY
IDSGHTGLVMQKQLLKLPAKFQVLPPQVVEFIVCSVKPIDNEMDWNPQVSRYIKQKISNK
SHEAKIALALGNTLWLNPVVRMAKLADLKTTILEYNIRSQIMNSGFGTDNAEHIERLKDL
CRVAGLSLPNEHSPLKQLRYDNKLEHVTLKNDGNYHSVVISEFCSPKKFHVRLVATRDAF
YAFENEINQKVMEKEMFISNSYVPTVGDLCLAFCETEKRWRRVKILSVVDSKRSYEVFFV
DFGTCSYISWNNIHPLLKDALRLPFQAICCSLLGVEPVEKLCNPEIKEWSWSTFQDKELQ
VKVIEQSRNDLTDAICYHVVVQDPSNAGSIKLSECMVSKQLGIGPPAILNQLFSEEAVEN
KETSYIFYLCSSVCALLGDQNSSSLRTTIVEELKDIVLQYPAESASESGLHFLCRLLRFL
SVPKEQTDVIIAMTHVARMQGRDLDEIKQERGIYVLVKLLQGVTSAELQESICIALGIPG
ENTDLHTAIIDANALKHLCHLLKMPIETNVWETTIGALASLLCSSRVCEEIEQQEIVCHL
CMKIELSSKDKVLENVLKVLCYLSGRPQSLNLMLLSGLVSTIDRLLVHTSSKTALYEVAN
NLKSSLASLQNLHCPQNDAASCERNTGIMDLPEDRQNKLAVDPKSFHPEIKWHQKEDRLI
LNIKLRNFTEHSCKFDHCRVVFSASVGTKLYLADLELNGRILEEKSSCVIKNEEPVIILF
KEEKSEWSTLLKFKNPNVTFDFNYLEEVTEDVSLPIWNGIRRNRKQVVIEPIIDEYDSFT
SANDSSEEDY
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaattttcatcataaaggtggaagaccctagctgtttctgggggagaataaca
aatggcttctgtgatctggttgaaaatgcaaatcaatatcaaagattggaggagaagatg
aatcaattctacaacaggagccatgaagatttagaggaaattaaacttcctgttctagaa
caagggcagatttgtgctatttactgtcatgagctacgatgctggtgcagggcaatacta
gaatctcttgtatcaagtggaagtagttatcttgcagagtgtttcctagttgactatgca
aaacacatactggtgaaagcaaaggatgtacgaagagcagttgatgccttttggaagctg
ccataccgtgctaaaaagtttacattgtttggcatacagccattgaccttgcacattgat
gtttgtgaagagaaagcaaaaattggcccagcagtaagatgggacagtgccgcaatacag
tatttccaaaaaatgtccctagaatctgaagtagctgaagcaaaattacaaggtgtgact
ggggatacctttgcagttcaattatacctctctctgaatgatgaaaaggtgtgtctgaat
gatgatttggtagcaaaattctttgcgtgttacgtttcaccgaaagacatggtgaaaagt
ccgaattctgcatcagcaatctcttcagcactataccaaaagaaggaagtgccagctaag
aagaatgtaggccatgcagcattagctctttggtctgagacagtgcaaggaagtgctctt
acagtattaaagcaaggtcctgctgaccaagagccagttgctcaatgtctacaatcccaa
gaaagcatatccagtaaaagtatgagcaaacaatacagtgagacagctgtatcgttgtcc
aatagaaaatcaactgagtcactcgcaaccttttctctttgttctttggaaaaagaatta
aattgcaagagagcaaggttttaccttcatgatgaaatggggatggacagggagtcctcc
ccagtgatgcaggaatgtgatgaaataccagctgctagaagactcctacagtttctaaat
ccagatccattgaacgcaaaaagtgaacttgaatttaatttacaacagccatcctacaaa
atggcttttgacccctggaacggagtcttggtgcattcactaatcaaactgagaccttgt
aggagcatggaaatgtcacctatttctctggatttaaagaaggaactgtggaagaaaaaa
attgttagtccaaatgttgtgcaagcttactgttggcctgctataggccgtggttgtgac
ttgattgcaatatcgcagaaaggagatgatcctcttctctacctccctccattgttgaca
tttttacaattaccatccgtgtatagctatcagcccaggcgaaatttgcctttagcaata
attgtttgcccgggacgacagaaggcccactttgtatgtcagatgttaatggacttaaca
agaacttcccgacctctttctctatccttggttttggttggacaagatccagaagaaacc
aagaaaacaaaatttaccaaaggatgtgatgtagttgttactactccacacagtttggca
cgtgtccttcaaatacactgtctatttttcattagactcagccatttggtattggataga
gttgatgtactttttgatgaagcaatggatgaaatgaatactatcttgcaatgcttcagg
gaagccaccaatgttccagaaagaggctcaaccccacaacagctcattgctgttggacag
cattggtcaaaaaaaatggacagtttactgaaagaaaatcaaagtgatccttatgtcgtt
ataactgtcatggaggaagctgccctatatgggaatgtccatcagattgtgaaggtttgc
ctagactgtgagaaaacatcatttttgattacgatgttggacttcacctctgaaattttg
cagaagactattatctttgctaattgtgctgaagaagtcgatcatgtgtttaaggcttta
ggcagtaattcacatttctgcatgaaggtccatgaaggaatgagcttgcaggtcagcaat
acaatggatgagtggagtaagaaattcaaccctggcacacatgtgatattagttacaact
gataactgcgtgaaagcattgaggattacagatgctacctgtgtaattcattatggtttt
ccctcatcttgtgagatatttggaactcgtctatgttgcatggttgacaattttgataat
ctgacaatggaggggtcaactcgtcaaggtcagtcaatcgtactacttactgaaaaagat
gttctacagacagtttccattctgcactacttggagagaacagaagctaaaattcccaaa
gaattatttaaatttattttgaacatgaataacccagatgacatttgctatgacagagcc
ttatgtaaataccttaaagcatatggaatttgcagggataataaaacatgtccaagtcgt
cacaaacttcatcacaatgcagacaagccgcggtatcttacagctgaaaagatattacct
gccacagggtacattgagattattccaacatgtgtcagtgatgcttcaagttgttatggt
agaataatacatcacaggaataaatgggaggataccccagtttcaatggaagaggactat
ctaatgcttttgaaagacatggctgattactacttggaagatgactgccggaaaccagta
gaacaattagaagtttctgctctgtatggattagaggagaaaagctacagtagggtgcag
ttaatagcattgccaaagaaagctgaaagtgcagttctcaggaatgcaagagtgaagtac
atcgacagtggtcacactggactagtgatgcagaaacagctgctcaaacttcctgccaaa
tttcaggttctgccaccacaagttgtcgaatttattgtatgtagcgtaaaacctattgac
aatgaaatggattggaatccacaggtttccagatatattaaacaaaagatcagcaataaa
tcacatgaagccaaaattgctcttgctcttggtaacactctatggctgaatcctgtagtg
cgtatggctaaattggctgatctgaaaaccacaatattagagtataacattcgttcacaa
atcatgaattctggatttggaactgataatgcggagcacattgaaagattgaaggatctc
tgcagggtagccggacttagtttgcccaatgagcattctcctctgaaacaactacgttat
gataacaagttagaacatgtcacactcaagaatgatggaaactaccattcagttgtaatt
tctgaattttgtagtccaaagaaatttcatgtgcgattagtggcaacacgtgacgcgttt
tatgcttttgaaaatgaaatcaaccaaaaggttatggaaaaggaaatgtttatttccaac
agttacgtgccaactgttggtgacttgtgcttggcattctgtgaaacagaaaagaggtgg
cgtagagtgaagatcttgtcagttgttgattccaaaaggagttatgaggtgttctttgtg
gattttggaacatgcagctatatttcttggaataatattcatcctttattgaaagatgcc
cttaggcttccttttcaggccatctgctgttcgcttcttggtgtggagcctgtggaaaaa
ctctgcaatccagagattaaagagtggtcctggtctactttccaggataaggaactccaa
gttaaagtaattgaacaaagtagaaatgatctaactgatgccatatgctatcatgttgtc
gtgcaggatccttctaatgctggctctataaaactttcagaatgtatggtatctaaacaa
ctaggcattgggccacctgcaattttaaatcaattgttttcagaagaagctgtggaaaat
aaagaaaccagctacattttctacctctgttcttcggtttgtgcacttttaggagatcaa
aattcatcatcattaagaactactatagtggaggaactcaaagacattgtgctgcagtat
cctgcagaaagtgcatcagaatcaggtttacacttcttatgcaggttgctcagattcctg
tctgttccaaaagaacaaactgatgtaataattgccatgactcatgtggccaggatgcaa
ggaagagatctggatgaaatcaaacaagagagaggaatttatgtacttgtgaagctgctt
cagggtgtgaccagtgcagaactacaagaaagcatatgtattgcacttggaattccaggt
gaaaacactgatctgcacaccgctataattgatgccaatgcattgaagcacctttgccat
ttattgaaaatgccaattgaaactaatgtgtgggaaactactattggagctttagcttca
cttctttgctccagcagagtttgtgaagaaattgaacagcaagagattgtatgtcacctt
tgtatgaagattgaactatcctcaaaggataaggttttggaaaacgttttgaaggttttg
tgttatctcagtggaagaccgcagagtctgaatttaatgttattgagtggacttgtttca
actattgacaggctgttagtacacacatccagcaagactgctttatatgaagttgcaaac
aatttgaagtcttcactggccagtttacaaaatttacactgcccacaaaatgatgcagcc
tcttgtgaaagaaatacaggcattatggatcttcctgaagacagacagaataaattagcg
gtggatcctaaaagctttcaccctgaaatcaagtggcatcagaaggaagaccgccttata
ctaaatatcaagttgcggaattttacagaacattcatgtaaatttgatcattgcagagtc
gtattcagtgcctctgttggtaccaaattatatttggcagatttggaacttaatggcagg
attttagaggaaaagagctcgtgtgtcattaaaaatgaagaacctgttataatactgttc
aaagaagagaaaagtgaatggagcactttgctgaaattcaagaatccaaatgttaccttt
gatttcaactaccttgaggaagtgaccgaagatgtgtctcttccgatttggaatggtatt
agaagaaacaggaaacaagtagtaattgaacccatcatcgatgaatatgatagttttacc
agtgctaatgatagttctgaagaagattactaa
DBGET
integrated database retrieval system
