Rhincodon typus (whale shark): 109930774
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Entry
109930774 CDS
T06055
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtp03036
]
109930774 (dicer1)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109930774 (dicer1)
microRNA pathway
RISC loading complex
109930774 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Dicer_dimer
Ribonucleas_3_3
PAZ
Helicase_C
Cas3-like_C_2
dsrm
DSRM_2
Motif
Other DBs
NCBI-GeneID:
109930774
NCBI-ProteinID:
XP_048455897
LinkDB
All DBs
Position
8:5013478..5086742
Genome browser
AA seq
1647 aa
AA seq
DB search
MSAHWDDRGPTSVPKQVLVDCRAVLTVLGPWCADKVAGMMVRELQKYIKHEQEELNRKFL
LFTDTLLRKIHALCEEHFSPAALDLKYVTPKVSKLLEILHEYKPFERQQFESVEWYNNRN
QDNYVSWSDSEDEDEDEEIEEKEKTDTNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAG
KQDPELSYVSSNFITGHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSVVEEG
VDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIMLSDSDKIEDFKEDLKTYKAIEKI
LRNKCSKSVDSADLEVEPVTDDDDVLPPYVLRPEEGSPRVTINTAIGHVNRYCARLPSDP
FTHLAPKCKTQELSDCTFQSTLYLPINSPLRVPVTGPPMPCTRLAEKAAALLCCERLHKI
GELDDHLMPVGKETVKYEEELDLHDEEETSIPGRPGSTKRRQCYPKAIPECLRNSYPKAN
QPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEV
TISIELRKLDFTLSTKQLELITRLHQYIFSHILRLEKPALEFKPTEADAAYCVLPLDKVD
GSNHLDIDFTFMEDIERSEARTGIPNTHYTKEKPFMFNLEDYQDAVIIPRYRNFDQPHRF
YVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHL
NQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLL
TAEELRAQTAKEAGVGIEALPSNFRYPNLDFGWKKSIDSKAYILTASSCTDENETYCMHS
TTVAPEDAAHRGAINETPFMENLHQPSLNSKTSTKSLSPKKLFSADKVTKSTIPVNGIVC
TENLTNGNAELLDKACICHQNQLNSYRHDLLVQPATSVPVRNTHHRENQPKPRVECNLQS
NNLDGITNKSTSDCCSKEAVSCNSSEPLAIPQWILDSGNCPPGIYTTETLGPNPGLILQA
LTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLG
KKKGLPSRMVVSIFDPPVNWLPPGYVVNQDRCIMDKSEVKDMAETEQVANGDSYLDDDDD
DEEEEDDDPDFREDLMWRAQKEEAEYDDDFSEYDQEHIKFIDNMLMGSGAFGKKISLPAF
PPNDASYEWKPPKKSASGNGHSSSDCDEFDYSSWDAMCYLDPSKATDEDDFVVGFWNPSE
ENGGVDTGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP
AEEKLVNKKIPPKEQSSFDLNSQTVTETPPSSTLKSLSCKDLEYGHLQIPPRCMFDHPDA
DRTLGHLISGYENFEKRINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYL
ITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQF
QLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSRMSLETVWQVYY
PMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGR
SYRIAKSAAARRALRSLKANQPPLQNS
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcacattgggatgatagaggcccaacatcagtccctaaacaggtactggtagac
tgccgtgcagtattaaccgttctggggccttggtgtgcagataaagtagctgggatgatg
gtaagagagcttcagaaatatataaagcatgagcaggaggagttgaacagaaagttcctt
ttgtttacagacactcttcttaggaaaattcatgcactctgtgaagagcacttctcacct
gctgcactcgatctgaaatatgtaaccccaaaagtcagtaaattgctggaaatcctgcac
gagtacaaaccttttgaacggcagcagtttgaaagtgttgaatggtacaacaacagaaac
caggacaattatgtatcatggagtgattctgaagatgaggacgaggatgaagaaatagag
gaaaaggagaagactgacactaacttcccatcccctttcaccaatatattgtgtgggatt
atttttgttgagagacgctatacagctgttgtcttaaacaggttaataaaagaagcaggc
aagcaggatccagagttgtcttatgtcagcagtaatttcataactggtcatggcattgga
aagaaccagcctcgtaataaacagatggaagtggagttcaggaaacaagaagaggtgctc
agaaaattccgtgcgcatgagaccaacttgctcattgcaactagtgttgttgaagaggga
gttgatattccaaaatgcaatctggtggttcgatttgatttgccaacagaatatcgttcc
tacgtccaatcaaaaggaagagcacgagcacccatctcaaactacatcatgctttcagat
tccgacaaaattgaagatttcaaagaagacctcaaaacctacaaggcaattgaaaagatt
ctgcgaaacaagtgctcaaagtctgtggattctgctgatttggaggtagaacctgtcacc
gatgatgatgatgtgcttcccccatatgtattgaggccagaagaagggagtccgcgagta
actatcaacactgccattggacacgtgaacaggtactgtgccagattaccaagcgatcca
ttcacgcacttggctccaaaatgtaaaacccaggaactctcggactgtacttttcagtcg
acactctaccttccaatcaactcgcctcttcgtgtcccagtaactggtcctccgatgcca
tgtacaagattggctgagaaagcagcagcccttctttgttgtgaaagactgcacaaaata
ggtgaacttgatgatcacttaatgccagttgggaaagaaactgtgaaatatgaagaggaa
cttgatttgcatgatgaggaagaaaccagtattcctgggagaccaggttccacaaaacgg
agacagtgctaccctaaagcaattcctgaatgtctgaggaacagttaccccaaagcaaac
caaccttgctacttgtacgtgattggcatggtgttaaccactccgcttcctgatgagctc
aacttcagaagaagaaaactgtatccaccagaagatacaacccgatgttttgggattctg
actgccaaaccaatacctcggattcctcattttccagtatacactcgctctggtgaggtt
accatatctattgaactgcgtaaattagatttcacgttgagtacaaagcagctggagctg
atcactaggctacatcagtatatcttttctcacattcttcgtctggagaaacctgcacta
gaattcaagcctacggaagctgatgcagcctattgtgttctacctcttgataaagttgat
ggttccaaccacttggatatcgacttcacctttatggaagatatagaaaggtcagaagcg
cgcacaggcattcccaatacacactatacaaaagagaaaccctttatgtttaatctggaa
gactaccaggacgcagttatcattccaaggtatcgaaactttgaccagcctcatcgcttc
tacgtggctgatgtatacaccgatctcacacctctgagtaaattcccttcccctgagtat
gaaacatttgcagagtattacaaaaccaaatacaatcttgatttgaccaacctgaaccag
cctttactggatgtggaccacacatcgtccagactgaatcttttaacccctcggcatttg
aatcaaaagggaaaggcacttcctttaagtagtgcagagaaacgcaaggccaaatgggag
agtctacaaaacaaacagattcttgtcccagaactctgtgctattcatccaatcccagct
tccttatggagaaaggcagtctgccttccaagtattctctatcgactgcactgtctgtta
acagcagaggagctgagagcccaaacggcaaaggaagcaggtgtgggaattgaagctctt
ccttcaaacttcaggtatcccaacctagattttgggtggaaaaagtctatagacagcaaa
gcttacatcttgacagccagctcctgtacagacgaaaatgagacttactgtatgcacagc
acaactgtagcccctgaagatgctgcacatcgaggtgctatcaacgagacccctttcatg
gagaaccttcatcagccgtctctaaacagcaaaacatccaccaagagtctgtcacccaaa
aagctcttcagtgctgacaaagtcaccaagagcacaataccagtaaatggcatagtttgt
accgaaaacctaaccaatggaaatgctgaactgctagacaaggcttgcatttgccatcaa
aatcaacttaactcgtacaggcatgacttactcgtacaaccagctacctcagttcccgtg
cgtaatacacaccacagagagaaccagcccaagccccgagttgaatgtaatctacaaagt
aataacctagacggaattactaacaaatctacctcagattgttgctcaaaagaggcagtt
tcctgcaattcctcagagcctctagcaattccgcaatggattttggattcgggcaattgc
ccccctggcatatatacaaccgaaaccctcggccccaaccccggtctgattctccaggct
ttgacgttgtcaaatgccagcgacgggttcaatttagagcgcctggagatgcttggtgat
tcattcctaaaacatgctatcacaacgtatctgttttgtacgtacccagatgcccatgaa
gggcggctatcttacatgaggagtaagaaggtcagcaactgtaatctctaccgccttgga
aagaagaagggactccccagtcggatggttgtctcaatatttgatccaccagtgaattgg
ctccctcctggctacgtggtaaatcaagacagatgcattatggacaagagtgaggtgaag
gacatggcagaaacagaacaagtggctaatggtgattcttacctggatgatgatgacgat
gatgaggaagaggaggatgatgaccctgatttccgtgaagatctgatgtggagggcgcag
aaggaggaagcagaatatgatgacgacttctcggagtatgatcaggagcacatcaaattc
atcgacaatatgcttatgggctctggagcatttggaaaaaagatctctcttcctgctttc
ccgcccaatgatgcaagctacgaatggaaacctcccaaaaaatctgcatcaggaaatggt
cattcctcctctgattgtgatgaatttgactacagctcctgggatgctatgtgctacctt
gatcctagtaaggctacagatgaagatgattttgttgtgggattctggaacccatccgaa
gagaatggcggtgttgatactggcaagcagtccatttcttatgacttgcacactgagcag
tgcatagcggataagagcattgccgattgcgtagaggctttgttgggctgctatctaacc
agctgtggtgaaagagctgcccagctttttctctgctcattgggtttgaaagtcctccca
gcagaagaaaagctagtcaacaaaaagatcccaccgaaggaacagagctcctttgatcta
aactctcagacagtcactgaaactcctccttcatccactttgaaatccctttcttgcaag
gacctagaatatggacatcttcagattcctcctagatgtatgttcgatcatccagatgct
gacaggaccctgggccatttaatatcaggctatgaaaactttgaaaagagaataaactat
aggttcaagaacaaggcctatcttttacaggcatttacccatgcctcctaccactacaac
acaatcacagattgttaccagcggttggaattccttggagatgcaattttggactacctc
ataaccaagcacctttacgaagatccccggcagcattctcctggagtgttgactgacctg
cgctccgcccttgtgaacaataccatctttgcttctttagctgtgaagtatgactaccac
aaatacttcaaagccatctcacccgagttgttccatgttatagatgactttgttcagttc
cagttagaaaaaaatgagatgcaaggaatggactctgagctaagaagatctgaagaagat
gaagaaaaggaagaagatattgaggttccaaaggccatgggagatatctttgaatctctt
gctggtgccatctacatggacagcaggatgtccttggaaacagtttggcaagtctattac
cccatgatgagacccttgatagagaaattttcagcaaatgtaccccgctccccggttcgt
gaattgttggagatggagcctgagactgccaagttcagccctgcagaaagaacttatgac
ggtaaagtccgtgtcaccgttgaggtggttggcaaaggaaagttcaaaggagttggccgc
agttacaggattgccaaatccgcagccgcccggagagcactacggagcctgaaggcaaat
cagcctccactgcagaatagctga
DBGET
integrated database retrieval system
