Rhincodon typus (whale shark): 109930775
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Entry
109930775 CDS
T06055
Symbol
smc3
Name
(RefSeq) structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04110
Cell cycle
rtp04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
109930775 (smc3)
04114 Oocyte meiosis
109930775 (smc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtp03036
]
109930775 (smc3)
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
rtp00535
]
109930775 (smc3)
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
109930775 (smc3)
Meiosis-specific proteins
Cohesin complex and associated proteins
109930775 (smc3)
Proteoglycans [BR:
rtp00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109930775 (smc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_15
AAA_21
AAA_29
CreS_N
MFD_D3
Baculo_PEP_C
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
109930775
NCBI-ProteinID:
XP_048464711
LinkDB
All DBs
Position
20:complement(51291724..51390858)
Genome browser
AA seq
1097 aa
AA seq
DB search
MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ
RLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKND
VMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESINLMK
ETEGKREKINELLKYIEERLHTLEDEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLD
EVRAKSDFELLLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQI
AAITKDLEDTEANKERNLEQYTKLDQDLAEVKARVEDLDKKYYEVKNRKDELQSERNYLW
REENAEQQALAAKREELEKKQQLLRGATGKAILNGIDSINKVLEHFGRKGINTHVINGYH
GIVMNNFECDPAFYTCVEVTAGNRLFYHIVESDEVSTKILMEFNKQNFPGEVTFLPLNKL
DVRDTAYPETNDAIPMISKLRYIQRFDKAYKHVFGKTLICRSMEVSTQLARAFNMDCITL
EGDQVSHRGALTGGYYDTRKSRLELQKDARKAEEELTELEAKLNENLRRNIEKINNEIDQ
LMNQMQQIETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMEST
RESLKAELGTDLLSQLSLDDQKRVDALNDEIRQLQQDNRQLLNERIKLEGIMTRLETYLS
ENLRKRLDQVEQELNDLRETEGNTVLNATTSELENINKRVRETTARAEELDSLIDKIEAE
TKDRQKSMDRWKTMEKDHMEAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEA
FEKYQTLSLKQLFRKLEQCNQELKKYSHVNKKALDQFVNFSEQKEKLMKRQEELDRGHKS
IMELMNVLELRKYEAIQLTFKQVSKNFSEVFTKLVPGGKASLVMKKGDVEGSQSQDEGEG
SASQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFY
LFDEIDQALDAQHRKAVSDMISELSAHAQFITTTFRPELLESADKFYGVKFRNKVSHIDV
ITAEQAKDFVEDDTTHG
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgtacattaaacaggtgattatccagggtttccgcagttacagggatcaaacaattgtt
gatcctttcagctccaagcataatgttatagttggccgaaatggatctgggaaaagtaac
tttttctatgcaattcagtttgtgcttagtgatgagttcagccaccttcgcccagagcag
agacttgctctactgcatgaaggaacaggacctcgtgtcatttctgcatttgttgaaatt
atatttgacaattcagacaataggttacctattgacaaagaagaggtttctctccgtcgt
gtcattggggcaaagaaggatcagtattttttagacaagaaaatggtgacgaaaaatgat
gtcatgaatcttttggaaagtgctgggttttctagaagcaatccttactacattgtcaag
caaggaaagattaatcaaatggcaacagcgccagactctcagcgactgaaacttttgcga
gaagttgctggtaccagagtttatgatgagcgaaaagaggaaagcatcaatctaatgaaa
gaaacagagggaaagagggaaaagattaacgaattgttgaaatacattgaggaacgtcta
cataccctggaagatgagaaggaagaattggcacagtaccagaaatgggataagatgaga
agagcacttgagtatactatctataatcaggaactgaatgaaactcgtgccaaacttgat
gaggtgagagcgaagagtgattttgaattactactggcacaggccacccaagaaaggaca
gatttgtatgctaaacaaggtcgaggcagtcagtttacgtcaaaagaggaaagagataaa
tggatcaagaaagagctgaaatcgcttgatcaagctattaatgataaaaaacgacaaatt
gctgcaattaccaaggaccttgaggatacagaagccaataaagagagaaacctggaacaa
tacactaaacttgatcaagatctggccgaagtaaaagcacgagtggaggatcttgacaaa
aaatattatgaagtaaaaaacaggaaagatgagctgcaaagtgagaggaattacctatgg
cgggaagaaaacgctgaacagcaagcgttggcagcaaaacgagaagaattggaaaagaaa
cagcagcttcttcgaggtgcaacaggaaaggccattttgaatggtattgatagcataaac
aaagtattggaacacttcggtcgtaaaggcatcaacacacacgtaataaatggatatcac
gggattgtaatgaataactttgaatgtgatccagccttttacacttgtgttgaagtcact
gctggaaaccgactcttctatcatattgtggaatctgatgaagttagtacaaagattttg
atggaatttaataagcaaaactttcctggcgaagtcactttccttccactcaacaaattg
gatgtgcgagacacagcttatcctgaaaccaatgatgctattcctatgataagcaaactt
agatatatacagagatttgataaagcttataaacatgtgtttggaaaaacattaatctgt
cgaagtatggaggtatccactcagctagccagagcatttaatatggattgcataactttg
gaaggtgaccaggttagtcatcgaggtgcattaactggtggctattatgacactagaaaa
tcaagactcgagcttcagaaggatgcacgaaaagcagaggaagaattaactgaattagaa
gcaaagctgaatgaaaatctccgtcgaaacattgagaagattaataatgagattgaccaa
ttaatgaaccaaatgcagcagattgaaacgcaacagagaaagtttaaagcatcacgagac
agcattctatcagaaatgaagatgttgaaagagaagaggcaacagtctgagaaaaccttc
atgcctaagcaacggagtttgcagagtttagaggccagtttgcatgcaatggagtcaaca
cgggaatccctaaaagctgagcttggtacagacctgctctctcagcttagcttggatgat
caaaaaagagttgatgcactcaacgatgagatccgacagctccaacaggataaccgtcag
ctattaaatgaacgaattaagttggaaggtataatgaccagattggagacttacctcagt
gaaaatttaagaaagcgcttggaccaggttgagcaggagttaaatgacctgcgagaaact
gagggcaatactgttctaaatgccacaacatctgaactagagaacattaataaacgggtg
agagagactacagcacgtgcagaagaactggacagtttgatagacaaaatagaagcagaa
accaaagatcgacaaaaaagcatggatcggtggaaaacaatggagaaagatcacatggaa
gccatcaaccatgataccaaggagctggagaagatgacaaaccggcagggtatgctgctg
aagaaaaaagaggaatgcatgaagaaaatcagagaattgggctcattgccgcaagaggct
tttgaaaaataccaaacgctgagtcttaaacagctgttccgaaagttggaacaatgtaat
caggagttgaagaagtacagccatgtcaacaagaaagccctggaccagtttgtgaatttc
tctgaacagaaggagaaacttatgaaacgtcaggaagagcttgatcgtggccacaaatct
attatggaacttatgaacgtactggagttgagaaagtatgaagccatacagcttaccttc
aagcaggtgtctaagaatttcagtgaagtattcacaaagttagttcctggtggtaaagca
tcactggttatgaagaaaggtgatgtggaaggaagccagtcacaggacgaaggtgaaggt
agtgcatctcagagtagtgtcccatctgttgaccaattcacaggagttggaattcgggtg
tcttttacagggaaacaaggtgaaatgagagaaatgcagcagctttctgggggtcagaaa
tccctcgtggcacttgctttaatctttgcaattcaaaaatgtgacccagctcccttttat
ctcttcgatgaaattgaccaggccctggatgctcagcacagaaaagctgtttcagacatg
atttctgaactctcagcacatgcccagttcattaccactacattcaggccagaattgctt
gaatcagcagacaagttttatggagtgaagttcaggaacaaggtcagtcacattgatgtg
atcacagccgaacaagcaaaagattttgtggaagatgatactacacatggataa
DBGET
integrated database retrieval system
