Rhincodon typus (whale shark): 109930802
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Entry
109930802 CDS
T06055
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like isoform X5
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109930802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109930802
03021 Transcription machinery [BR:
rtp03021
]
109930802
03036 Chromosome and associated proteins [BR:
rtp03036
]
109930802
Transcription factors [BR:
rtp03000
]
Eukaryotic type
Helix-turn-helix
ARID
109930802
Transcription machinery [BR:
rtp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109930802
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
109930802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
109930802
NCBI-ProteinID:
XP_020385829
LinkDB
All DBs
Position
9:33206279..33377703
Genome browser
AA seq
1592 aa
AA seq
DB search
MPGMQRNSQISQYGSQHSGPPVSPHPSPGGQVQPGTVPYQQSNSSSTYGPQSGQYGPQGC
AMTVKRNGSTHGTEGKDRGTVDLEVVKIVDGNTGGNYPRPPNYGVVPNTNYSGPGPGMCN
NMSMNVTNQMHGQGPTQPCSNMTMGRMPSSGMSNWPYSGNMGNVTPNSPNMSQQVGAGMG
PPMATVNRKAQEAAAAVMQAAANSAQNRPPYIRSPGFPSQTGPGGRPVFPPQHPNYGNTQ
APMMYQPDQYGQTGYTGMNQSSMMGSSPPYSQPVNNSSIMTNPQTTPYNMASNMVNNSSA
SMGLGADMMTQADSKLQVPQKMDIKEEGPPPTETKSKKSNSSTTGEKITRLYELGSEQER
KMWIDRYLTFMEERGTPVTTLPAVGKKPLDLYRLYVCVKEVGGLAQVNKNKKWRELATAL
CVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEMFSSAESKKQPKIQPPSPAGSGSL
QGPQTPQSTSSSLAESGDLKPPTPVSTPLGQMTPIQGNRNNAISVQDPFSDVSDPAFQKW
GSMTPNAPYQQGMNMPEMMSRMSYEPNKDPFGGMRKVPGSNDPFMPPGVMPNSGMQDLYN
RTPSGGMVNLNVGQRQQYAYGSGYERRPEHGMGPEGNMGPPGGQSNMMSSNSDSSMYSPN
RYPAQQRHDPYGQQYPGQGPPSGQTAYGGHQTGIYPQQQNYKRPMEGMYGPPPKRHESDM
FNMQYGNQQQEMYNQYGNTYSGPDRRSMQNQYPLTYNRERMQGPGPGPVQQHGIPPQMMG
GPMQVSSTEGPQQGVWQSRTDTAITPYPYPNRQGPGAPPPASPYAGMNRTDEMILPDQRM
NHEGQWPSHVNQRQPSYMSSASMPSISRPSQSSYQTTSMPNHISRAPSPAPFQRSLENRM
SPNKSPYMSSMKMQKVGPPVPASQVVAPQQQQPPMRREITFPPGSVEASQPVLKARRKLT
SKDTGAPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYF
RRCLIEIFGILKEYEVGDPGQKALLDPDAFKKDDVNCTADDIKKDEVEEQLDYDDDYDDC
DGDDIDEEEDGQSGNEESRVNIATNDSQVSDEKPKQASKFDRLPLKIVKRKDLFVVDRTN
KLGRVQEFDSGLLHWKIGGGDTTEHIQTHFESKMEMLSRKKVPGCLSSPNKEKKTKEHEI
FEDINTEEQPEKSITATIDDVLSARPGALPEDNSNHLTSETDSSKFLFGIHQAKAHRNIK
LLEDEPCSRDETPLCTISDWRDSLAKRCICVSNIVRSLSFVPGNDAEMSKHSGLILILGK
LILLHHEHPERKRTPRTYEKEEEEDEGVACNKDEWWWDCLEVLRENTLVTLANISGQLDL
SVYPESICLPILDGLLHWMVCPSAEAQDPFPTVGLNSVLSPQRLVLETLCKLSIQDNNVD
LILATPPFSRQEKLYATLVRYVGDRRISVCREMSVALLSNFAQGDTLVARAIAVQKGSIS
NLISFLEDGLTVAQLQHSQPNLMHMQPPPIEPTSVHMMCRAAKALLAMARIEENRSEFVL
YEGRLLDISISSILNSMVASVICDTLFMIGQL
NT seq
4779 nt
NT seq
+upstream
nt +downstream
nt
atgccaggtatgcaaagaaactcacaaatatctcagtatggatctcagcattctggtcct
cctgtttctccacatccatcgcctggaggacaggtgcaacccggtacagttccttaccag
cagagcaactccagcagcacttatggacctcaaagtgggcagtatggaccgcaaggttgt
gccatgacagttaaaagaaatggcagcactcatggaacggaaggaaaggacaggggcact
gtcgatctcgaagtagtaaagatcgtcgacggaaacactggaggtaattatcccagaccg
ccaaattacggtgtagtaccgaacaccaactacagtggtccaggtccaggcatgtgtaac
aacatgagtatgaatgtgaccaaccagatgcatggtcaaggtccaactcaaccttgcagt
aacatgactatggggagaatgccatcatcagggatgtcgaactggccatactctggcaac
atgggaaatgtgaccccaaactccccaaacatgtcacaacaggttggcgcaggaatgggt
ccacccatggcaacggtaaatcgcaaggcgcaggaggctgctgctgcagtgatgcaggct
gcagcaaactctgctcaaaacaggccaccgtatattaggtcgcctggttttcccagtcaa
actgggcctggtggacgtcctgtgtttccaccacaacatcccaactatggcaacactcag
gctcccatgatgtaccagcctgaccagtacgggcaaactggatacactggaatgaaccaa
agcagtatgatgggctctagccccccctacagccagcctgtgaataacagctcgataatg
acaaaccctcagactactccatacaatatggcatccaacatggtgaacaactcttcagct
tcaatgggtctcggagcagacatgatgacacaggccgattccaaacttcaagtacctcag
aaaatggatattaaagaagaaggaccccctccaactgagaccaagtctaagaaatcaaac
tcttccacaactggtgagaagataaccaggttgtatgagctggggagtgaacaggaacgc
aagatgtggatagaccgttatctgaccttcatggaggaaagaggaacaccagtgaccaca
ttacctgctgtgggcaaaaaaccattggacctttatcgactttatgtctgtgttaaggaa
gttggtggtttggcacaggttaacaaaaacaaaaaatggcgtgaattggcaacggccctg
tgcgtaggtacatcaagcagtgcagccagctcactaaagaaacaatacattcagtacctg
tttgcctttgaatgtaagattgaacgtggagaagagccccctcctgagatgttcagttct
gctgaatccaaaaagcagccgaaaatacaaccaccttctcctgcaggttcaggttccttg
caaggaccgcagacgcctcagtccaccagcagctcattggcagaaagtggagatttgaaa
ccaccaacccctgtctcaacaccacttggacaaatgacacctattcagggtaacaggaat
aatgcaatcagtgtgcaggatcccttctccgatgttagtgatccagcattccagaaatgg
ggctccatgaccccaaatgcaccataccaacagggaatgaatatgcctgaaatgatgagt
cgaatgtcatatgaacccaataaggatccttttggtggtatgaggaaagtgcctggaagt
aatgatccttttatgccccctggagtaatgcctaacagtgggatgcaggatctgtacaac
cgtacaccatcaggaggaatggttaacttgaatgtgggtcagcggcagcagtatgcttat
ggatctggctatgagcgaaggcctgaacatggaatgggtcctgaaggcaatatggggcct
ccaggaggccagtctaatatgatgtcatcaaacagtgactcaagcatgtactcaccaaac
cgctaccctgcgcaacaaaggcatgatccttatgggcagcaatacccaggccaaggtcct
ccctcaggacagacagcatatggaggccatcagacaggaatttatccacagcagcagaat
tataaacgacccatggaaggcatgtatggtcccccaccaaagcgccatgagagtgacatg
ttcaacatgcagtatggcaaccaacagcaggaaatgtacaaccaatatggaaacacttac
tctggaccagacaggagatccatgcaaaaccagtatccgttgacatacaatagagagagg
atgcagggtccaggtccaggcccagtgcagcaacatggaataccaccacaaatgatggga
ggaccaatgcaagtatcctccaccgaagggccacagcagggcgtgtggcaatcacggact
gatacggcaatcacgccttacccatacccaaacaggcaaggccccggagcacctccgccg
gcatcgccatatgcagggatgaatcgcactgatgaaatgatattacctgaccagagaatg
aaccatgaaggtcaatggccttctcatgtgaaccagcgtcagccttcatacatgtcttca
gcttccatgccgtctatctcacgaccttctcagtcctcctatcagacgacttcaatgcca
aaccacatttccagagctccaagtccagctccctttcagcgatctttagaaaaccgaatg
tctcccaacaagtctccatatatgtcatccatgaagatgcagaaggttggccctccagtt
ccagcctcgcaggttgttgctccacaacaacagcaaccccctatgaggcgggaaattacg
ttccctcccggttcagtggaagcatcgcaaccagtcttaaaagcaagacgaaaacttacc
tcaaaagatactggagctccagaggcatggagagttatgatgtctctcaaatctggtctg
ttggcagaaagcacttgggctctggataccatcaacatcttactttatgatgatagcact
gtagccacattcaacctctcccaattgtctggtttcttggagcttctggtggaatatttc
cgaagatgcttgatagaaatatttggaatattgaaagaatatgaggttggagatccaggc
cagaaggctctccttgatccagatgcttttaagaaagatgatgttaactgtactgcggat
gatattaagaaagacgaggttgaagaacaactagattatgacgatgattacgatgattgt
gatggcgatgacattgacgaagaggaagatggccagtctggaaatgaagagagccgagtc
aacattgcaacaaatgattcacaggttagtgatgagaaaccaaaacaagccagtaaattt
gacagactgccattgaagattgtgaagagaaaggatctttttgtggttgatcgtacaaat
aaacttggtagagttcaagaattcgacagtggattgctccattggaagattggtggaggc
gatacaacggagcacattcagacccattttgagagtaaaatggaaatgctatcacgcaag
aaggtgccaggatgcttaagcagtccaaataaagagaagaaaacaaaagaacatgagatc
tttgaagacataaatacagaagagcagccagaaaagagtatcacagcaacaatagatgat
gtattgtcagcacggcctggagctctaccagaagacaattctaatcatttgacttctgaa
acagacagcagtaagtttctatttggtatacaccaagcaaaagcacacagaaatataaag
ttattggaggatgagccttgtagccgtgatgagactccattgtgcacaatctctgactgg
cgggactctttggcaaaacgttgcatatgtgtgtcaaatatagttcgtagcttgtctttt
gtgcctgggaatgacgctgaaatgtcaaagcactcgggcctaatacttattttggggaag
ctaattttgcttcatcatgagcatccagaaagaaagagaacaccacgaacttatgagaaa
gaggaagaagaggacgaaggggtagcctgcaacaaagatgaatggtggtgggattgcctt
gaggttttacgggagaacacattagttaccttagccaacatttccgggcagctggacctg
tctgtatacccagaaagcatttgtttgccaattttggatggcttgctacactggatggtc
tgtccttcagcagaagcccaggatcctttcccaacagtgggacttaattcagtgctgtca
ccacagagacttgtgttggagactttatgtaaactcagcattcaggacaataatgtagat
ctcatcctggcaactccccctttcagccgccaggagaaactatatgctactttggttagg
tacgtgggagaccgaagaatttcagtctgccgagaaatgtccgttgctctgttgtcaaac
tttgcccagggggacacattagtggctagagctattgctgtgcaaaaaggaagcatcagc
aatctgatcagcttccttgaggatggcctcactgtggcccaacttcagcacagtcagccg
aatttgatgcacatgcagcctccacctattgaaccaaccagtgtgcacatgatgtgtcga
gcagccaaggctttgcttgccatggctaggatagaagagaaccgctcagaatttgtttta
tatgagggccgcttgctagatatttctatatcatctattctgaactctatggttgcatct
gtcatttgtgatacactgttcatgattggtcaattatga
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integrated database retrieval system
