Rhincodon typus (whale shark): 109931121
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Entry
109931121 CDS
T06055
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109931121 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
109931121 (prpf8)
Spliceosome [BR:
rtp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109931121 (prpf8)
Complex C
U5 SnRNP specific factors
109931121 (prpf8)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
109931121
NCBI-ProteinID:
XP_020386042
LinkDB
All DBs
Position
26:complement(22323344..22374184)
Genome browser
AA seq
2333 aa
AA seq
DB search
MAAFPYRAAPGPNPVPVPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKEDMP
PEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVSVLYHI
TGAISFVNEIPWVIEPVYISQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNI
LDVEPLEAIQMELDSEEDGPVAEWLYDHQPLKDNPKYVNGSTYRRWQFTLPMMSTLYRLA
NQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDVNLQDEDWNEFNDINKI
IIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPISHR
HSVKSQEPLPDDDEEFELPDCMEPFLKDCPLYSDHTANGIALLWAPRPFNLRSGKTRRAL
DIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKSTKFF
QSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGN
AFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYKLMRQI
RMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQFEG
RHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKA
NIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRL
YLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILA
LERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLY
SHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPSLVYKWCQGINNL
QDVWETADGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDM
NHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLHRASEMAGPPQMPNDFLSYQDVATEVA
HPVRLFCRYIERIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRL
MKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMSGFECRILPKCRT
SYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNK
WNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKEL
GGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDS
QRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDF
KQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLF
WEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFM
HGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKM
NSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARA
KFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGAKPLIQQAMAKIMKANPALYV
LRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKP
INGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQII
VTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDD
WLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQ
LKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTAT
QTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGY
TYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPNQ
LPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGS
CTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQSSWNYN
FMGVRHDPNMKYELHLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYS
NT seq
7002 nt
NT seq
+upstream
nt +downstream
nt
atggcagcatttccgtacagggccgcacctgggcccaatcccgttccagtccctctacct
gattacatgtctgaagaaaagctacaagagaaagccaggaaatggcaacaacttcaagct
aaacggtatgctgaaaagagaaagtttggcttcgtggatgctcagaaggaggacatgccc
cctgaacatgtccgaaagataattcgtgatcatggtgacatgacaaaccggaaattcagg
catgacaagagagtctatcttggtgctttgaagtacatgccacatgctgttctgaaacta
ctggagaacatgcctatgccatgggagcagatcagagatgtttcagttttgtatcacatc
acaggtgcaatctcatttgttaacgaaattccctgggttattgaaccagtttatatatct
caatggggaaccatgtggattatgatgagacgtgaaaagcgtgatagacgacacttcaaa
aggatgcggtttcctcctttcgatgatgaagagcctccactggattatgcagataatata
cttgatgtggagccactcgaagcaatacagatggaacttgattcagaagaggatggacca
gtggcagagtggttatatgatcaccagccactgaaagacaacccaaagtatgttaatgga
tcgacttatcgtcgctggcagtttactttgcctatgatgtctactctttatcgcctggct
aatcagttgctaactgatttagtggatgacaactacttctatctgtttgatctaaaagca
ttttttacatccaaagctcttaacatggcaattccaggtggacccaagtttgagcctctg
gttcgggatgtgaatcttcaggatgaagactggaatgaattcaatgacatcaacaagatc
atcatcagacaaccaatcagaacagaatacaaaatcgcattcccatacttgtacaataac
ctcccccatcatgttcatctcacctggtatcacacaccgaatgttgtgttcattaaaaca
gaagatccagatttgccagctttttactttgatccgttgattaacccaatctctcacaga
cactctgttaagagccaggaaccattaccggatgatgatgaagagtttgaacttcctgat
tgtatggaaccattcctgaaagattgtcctttatattcagatcatactgccaatggcata
gcattgctttgggcaccaagaccgtttaacttgaggtctggaaaaacaaggagagcactt
gacattcccttagttaagaactggtaccgtgagcactgtccagcagggcaaccagtcaaa
gttagggtttcttaccagaaactcctgaaatactatgtactgaatgcacttaaacacaga
ccacccaaagcacaaaagaaaaggtacttattccgttcattcaaatcaacaaagtttttc
cagtcaaccaaacttgattgggtagaggtaggcctccaggtgtgccgtcaaggttacaac
atgctgaatttgttgattcaccgtaagaatctgaattatctgcatctggactacaacttc
aacttgaagccagtgaaaaccctcactactaaggaacgtaagaagtccaggtttgggaat
gcattccatttatgccgtgaagtgctacgtttaacaaagcttgttgttgacagtcacgta
cagtacaggctggggaatgtggatgccttccagttgtcagatggattgcagtatatcttt
gctcacgttggacagttgactggaatgtacagatacaagtacaagctgatgagacaaatc
cgaatgtgtaaagatctgaagcaccttatctattacagatttaacaccggaccagtaggc
aaagggcctggctgtggattttgggctgctggctggagagtgtggcttttcttcatgagg
ggtataactccactgctggagaggtggttgggaaatctgcttgccagacagtttgaaggt
cgccattctaagggagtagctaagactgtaaccaaacagcgtgtggagtctcactttgat
ctagagttgagagctgctgttatgcatgatatcttggatatgatgcctgaaggaattaaa
caaaacaaggccaggacaatcttgcaacatttgagtgaggcttggagatgctggaaggca
aatattccttggaaggttccagggctgccgactccaattgagaacatgatccttcggtac
gtgaaagccaaagctgactggtggacaaatactgcacattacaacagagagcgtattcgc
cgtggtgcaactgttgacaagactgtgtgcaagaagaatctgggtcgcttaaccagactg
tacttgaaggcagaacaggaaagacagcacaactacctgaaggatgggccctacatcact
gccgaagaagccgttgccatctacaccaccactgtgcattggttagagagcagacgtttc
tctccaattcctttccctcctctttcatacaaacacgacacaaagcttctgatcctggct
ctagaaagattgaaagaagcttacagtgtgaaatcaaggctaaaccagtcacagcgagaa
gaattgggtctaatcgaacaagcctatgataaccctcatgaggctttgtccaggattaaa
cgacacttacttactcagagagctttcaaagaggttggtattgagtttatggatttgtac
agccacttggtacctgtttatgacgttgaaccattggagaagatcactgatgcttacctt
gatcagtacttgtggtatgaagctgacaagcgacggttattccctccatggattaagcca
gctgatacagagcctcctccatctcttgtatacaagtggtgccagggcatcaacaatctt
caggatgtatgggagacagctgatggtgaatgcaatgtcatgttagagtcgcgatttgag
aagatgtatgagaaaattgacttgactttgctgaacagattgctgcgtctaattgtggat
cacaacattgctgattacatgacagccaagaacaacgttgtcatcaattacaaggacatg
aaccacaccaattcctacggcattatccgagggctccagtttgcatccttcattgtccag
tactatgggcttgtgctagatctgcttgttttgggtctccacagagccagtgaaatggct
ggcccaccacaaatgccaaatgattttctgagttaccaggacgttgccacagaagttgct
catcctgtccgacttttttgcagatatattgagcgtatccacatttttttcaggtttacg
gctgatgaagccagagacttgattcaacgctatcttacagaacaccctgatccaaacaat
gagaacattgtgggatacaataacaagaagtgttggcctagagatgcacgtatgaggctt
atgaagcatgatgtcaaccttggtcgagcagtgttttgggatattaaaaatcgactacct
aggtctgttaccactattcagtgggagaacagttttgtgtctgtgtacagcaaagacaat
cccaacctgctattcaacatgtctggctttgagtgccgcattcttcctaaatgtcgtact
agctatgaagaattcactcacaaagatggagtctggaacttacaaaatgaggttaccaaa
gagcgcacagctcagtgcttcctccgagtggatgatgaatccatgcagcggttccacaac
agagtacgtcagatcctcatggcatctggctccacaactttcactaagattgtgaataag
tggaacactgctctgattggcttgatgacctatttccgtgaagcagtggttaacacgcag
gagttattagacctgttggtgaaatgtgagaacaagatccagacacgtattaagattggt
ttgaactccaagatgccaagtcgtttcccacctgtggtgttttacacacctaaggagctg
ggtggtcttggcatgctctcaatgggccacgttctcatcccacagtctgatttaaggtgg
tccaagcagacagatgtgggcatcactcattttcgatcaggtatgagccatgaagaggac
caattgattcctaatctttatcgttacattcagccttgggagagtgagttcattgactca
cagagagtatgggcagaatatgcgctgaaacgacaagaagctattgcacaaaataggcgt
ctaactttggaagatctggaagactcctgggacagaggtattccacgcattaacacattg
ttccagaaggacaggcacacgctagcttatgataagggctggagagtgagaactgatttt
aaacagtaccaggtgttaaagcagaatccattctggtggacccatcagagacacgatggc
aagctgtggaatttgaacaactaccgtactgacatgatccaagcgctaggtggtgttgaa
ggcattctggagcacacactcttcaagggaacttattttccaacatgggaaggcctgttc
tgggagaaagcaagtggctttgaggaatccatgaagtggaagaagctgactaatgcccaa
cgatctggtttgaatcagattcccaacagaagattcactctttggtggtcaccaactatc
aacagagctaatgtttatgtaggtttccaggtgcagttagatctgacaggaattttcatg
catggcaaaatccctactctcaagatttctttgatccagatcttcagagcccatttgtgg
cagaagattcatgagagcattgttatggatttgtgtcaggtctttgatcaagagttggat
gctttagagattgagactgtgcagaaagaaactattcatcctaggaaatcctataagatg
aattcgtcctgtgctgatattctgctgtttgcttcatacaaatggaatgtttccagacca
tcgctacttgctgactcaaaagatgtgatggatagcactactactcaaaaatactggata
gatattcagttgcgatggggtgactatgattctcatgatattgagagatatgccagagct
aagtttttggactatacaacagataatatgagtatctacccttcgcctactggtgtattg
attgctattgatctggcctataatttgcatagtgcttatggtaactggtttccgggtgcc
aagccattgatccagcaggctatggcaaagatcatgaaggctaaccctgccttgtacgtg
ttgagagaacgtattcgaaaaggtttacagctatattcttccgagccaactgagccttac
ctatcctcacaaaattatggtgaactgttttccaaccaaatcatttggtttgtggatgat
acaaatgtgtatcgtgtcaccattcataagactttcgaaggcaacttgacaacaaagcca
ataaatggagccatttttatattcaaccccaggacaggacagctgttccttaaaattatc
cacacttcggtttgggctgggcagaaacggttgggccagctggcaaaatggaagactgct
gaagaagtggctgccttgatccgatcgcttccagttgaagagcagcctaaacagatcatt
gttacaaggaagggcatgttagatccattggaagttcatttgctggatttccctaacatc
gtgatcaaaggatctgagctgcagttgcctttccaggcttgtctgaaagtggagaagttt
ggtgatctgattttaaaggcaactgagccccagatggtgttatttaacttatatgatgat
tggttgaagaccatttcctcctatactgcattctctcgtctgattttaattcttcgagca
ctacatgtgaacaatgatcgtgcaaaagtcatcctgaaaccggacaaaaccacgataaca
gaacctcatcacatctggccaactctgactgatgaagaatggataaaagtggaagtgcag
ttgaaggaccttattctagctgactatggcaagaaaaacaatgtaaatgtggcatctttg
actcagtctgagattcgtgacattattttgggtatggagatctcggcaccttcacaacag
aggcaacaaattgctgaaattgaaaagcaaaccaaagagcaatctcaattgacagctacc
cagacacgcactgtaaacaagcacggtgatgaaatcatcacttcaacaaccagtaactat
gagacccaaaccttctcatccaaaactgagtggagagtcagagcaatatctgctgccaac
cttcacctacgtaccaatcacatttatgtttcctctgatgacatcaaagagactggttat
acttacattctgccaaagaatgtgctgaagaagtttatttgcatttcagatttgagagca
cagattgcaggatatctgtatggtgttagtcctccagataaccctcaagtgaaggaaatc
aggtgtattgtgatggtgccacaatggggaacccatcagactgtgcatttgcctaaccag
ctgccacaacatgaatatctgaaggaaatggaacctcttggttggattcacactcaaccc
aatgagtctcctcagttgtcacctcaagatgtcaccacccatgctaaaataatggctgac
aatccgtcttgggatggagaaaagactatcatcataacatgcagctttactccaggttca
tgcacactgacagcatacaagcttactccaagtggatatgaatggggaaggcagaacaca
gacaaaggaaacaatcctaagggatacctgccttcccactacgaaagagttcagatgttg
ttatcagatagattccttggcttcttcatggtccctggccagagttcctggaattacaac
ttcatgggcgttcgccatgatcccaacatgaaatatgagctgcatttggccaaccctaaa
gagttctaccatgaagttcacagaccatctcatttcttgaactttgcttcgcttcaagag
ggggagatctacaatgcagacagagaggacatgtactcttag
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integrated database retrieval system
