Rhincodon typus (whale shark): 109931145
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Entry
109931145 CDS
T06055
Symbol
vps53
Name
(RefSeq) vacuolar protein sorting-associated protein 53 homolog
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109931145 (vps53)
Membrane trafficking [BR:
rtp04131
]
Protein recycling
Others
EARP complex
109931145 (vps53)
Endosome - Golgi transport
Tethering complex
GARP complex
109931145 (vps53)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
Vps54_N
GrpE
HAUS1
FBF1
COG4_N
IFT74
Sec8_N
GbsR_C
DUF8567
NBD94
COG3_N
Tropomyosin
WHD_1st_NFRKB
Med11
COG5_N
XhlA
Snf7
CREPT
TPR_CAND1
FUSC
MCPsignal
VPS51_Exo84_N
Motif
Other DBs
NCBI-GeneID:
109931145
NCBI-ProteinID:
XP_048468306
LinkDB
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Position
26:complement(12435236..12665234)
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AA seq
820 aa
AA seq
DB search
MAATMEEEELEFVDELEGVLHLSPEVQQAIEQVFPSQDPLDRADFNAVEYINTLFPTEQS
LANIDEVVNKIRLKIRRLDDDIRTVVRGQTNVGQDGRQALEEAQKAIQQLFAKIKDIKDK
AEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANL
MQGVVNVLEHFHKYMGIPQIRQLSERVRAAQTELGQQILADFEEAFPSQGSKRPAGPSNV
LRDACLVANVLDPKIKQEIIKKFTKQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVD
YEEKYGRMFPQEWCMSERITVEFCHVTRIELAKIMRTRAKEIEVKLLLFAIQRTTNFEGL
LAKRFSGSTLTDGIVLMSQIQALGRYLRFLESWSLKKNCQSPSVPTTTFVLHIHMNGFLY
HDGCGQNLSELIDRFMADFKAQGPPKPNTDEGGAVLPSCADLFVYYKKCMVQCSQLSTGE
PMIALTTIFQKYLREYALKILSGNLPKTTSSSGGLTISSLLKEKEGSEVAKFTVEELCLI
CSILSTAEYCLATTQQLEEKLKEKVDASLVERINLMTEMDTFSTVISNSIQLLVQDLDAA
CDPALTAMSKMPWQNVEHVGDQSPYVTSIILHIKQNVPIIRDNLASTRKYFTQFCIKFVN
SFIPKFINHLFKCKPISMVGAEQLLLDTHSLKTVLLDLPSIGSQVIRKAPASYTKIVVKG
MTRAEMILKVVMAPHEASVVFVDNYIKLLADCSTDTFQKVLDMKGLKRSEQSSMLELFRQ
RLPTPPSGGENNLTTSLSAPSPEQESSRIRKLEKLIKKRL
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaccatggaggaggaagagctggagtttgtggatgagttggagggtgtgtta
cacctgtctccggaggtgcagcaggcgatcgagcaggtgtttcccagccaggatcccttg
gacagggctgatttcaatgctgtggaatacatcaacacgctcttccccacagaacagtct
ttggccaacattgatgaagttgtaaacaagattagactaaaaatcaggaggttggatgat
gacattcgaactgtagtgagaggacagaccaatgtgggacaagatggccgacaggctttg
gaagaagcacaaaaagccattcagcagctttttgccaagataaaagatattaaggacaaa
gcagagaaatcggagcagatggttaaggaaatcacacgggatattaaacaacttgatcat
gcaaaacgccaccttaccacttccatcactacactcaatcacctgcatatgcttgcaggc
ggcgttgactcattggaggctatgactcgtcggagacaatatggagaagtggctaacctc
atgcaaggagtggtgaatgttttggaacattttcataagtatatgggtattccacagatc
cgtcaactttctgaaagggtacgagctgctcagactgagttgggacagcagatcttggca
gattttgaagaagcttttccatctcaggggtcaaagaggccagcgggtcccagtaatgtt
ctacgtgatgcctgccttgttgccaatgtgctggatcccaaaattaaacaggaaatcatt
aaaaagtttacaaagcaacatctttcagagtaccttgttctgttccaagaaaaccaagat
gtggcatggctggataagatagatcgacgctatgcatggattaaacgccaactggtagat
tatgaagagaaatatggccggatgttcccacaggaatggtgcatgagtgaacggatcact
gtggagttttgccatgtcaccaggattgagctggctaaaataatgcgcacaagagccaag
gagattgaagtgaagttgctgctgtttgcaattcaaagaacaacaaatttcgaggggctg
ttggccaagcggttctcgggcagcacgctgacggatgggattgtgctgatgtcccaaatt
caggcactgggcagatatctccgctttctggagtcttggtctttgaaaaaaaactgtcaa
tcccctagtgtccccactactacatttgttttgcacatccacatgaatggtttcttgtac
cacgatggctgtgggcagaatctcagtgaactgattgataggtttatggcagattttaaa
gcccaaggccctccaaagcctaacactgatgaagggggtgccgtgcttcctagctgtgct
gatctgtttgtctactacaagaaatgcatggtgcagtgctcacaactcagcactggagag
ccgatgattgctctaaccaccatattccagaaatatctgcgagaatatgcattgaaaatc
ctctccggaaacctgccaaaaactacaagcagcagtggtggtttgaccatttccagcctt
ctgaaggagaaggaaggctcggaggttgcaaagttcactgtggaggagctctgcctcatt
tgtagcattctcagcactgctgaatactgcttggcaacaacacaacagcttgaagagaaa
ctcaaagaaaaagtggatgcaagtctggtggaaaggattaacctgatgacagaaatggac
accttcagcactgtgatttccaacagtattcagctgttagttcaggacttggatgcagcc
tgtgatcctgcactcactgccatgagtaaaatgccatggcaaaatgtggaacatgttggt
gatcagagtccatatgtcacatccataatcctccatatcaaacagaatgtgcctatcatt
cgagataaccttgcctctactcggaagtacttcacacagttctgcatcaaatttgtcaac
tccttcattcccaagttcatcaaccacctcttcaagtgcaagccaatcagtatggtggga
gcggaacagcttctacttgacactcattctctgaaaacagttctgcttgatcttccttcg
attggttctcaagtcatacgcaaggccccagcaagctacacaaagattgtcgtcaaaggc
atgactcgggcagagatgattctaaaggtggtaatggcacctcatgaagcatctgtggtg
tttgtagataattacatcaaactcctggctgattgtagcacagacacattccagaaagtt
cttgacatgaagggtctgaagcgcagtgaacaaagcagcatgctggaactattccgacag
aggctacccactcctccttcaggcggagagaacaatttaacaacgtcgctatctgcaccg
tcccccgaacaagaatcttccaggatccgtaaactggaaaaactcataaagaagaggctg
taa
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